2019

Peng, C., Duarte, C. M., Costa, D. P., Guinet, C., Harcourt, R. G., Hindell, M. A., … Zhang, X. (2019). Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species. Applied Sciences, 9(14), 2935. https://doi.org/10.3390/app9142935
Mazarrasa, I., Marbà, N., Krause-Jensen, D., Kennedy, H., Santos, R., Lovelock, C. E., & Duarte, C. M. (2019). Decreasing carbonate load of seagrass leaves with increasing latitude. Aquatic Botany, 159, 103147. https://doi.org/10.1016/j.aquabot.2019.103147
Yu, L., Zhang, C., Liang, S., & Zhang, X. (2019). Multi-Order Attentive Ranking Model for Sequential Recommendation. Proceedings of the AAAI Conference on Artificial Intelligence, 33, 5709–5716. https://doi.org/10.1609/aaai.v33i01.33015709
Mahadik, G. A., Agusti, S., & Duarte, C. M. (2019). Distribution and Characteristics of Halobates germanus Population in the Red Sea. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00408
Zhao, J., Shang, S., Wang, P., Lui, J. C., & Zhang, X. (2019). Submodular Optimization over Streams with Inhomogeneous Decays. Proceedings of the AAAI Conference on Artificial Intelligence, 33(01), 5861-5868. https://doi.org/10.1609/aaai.v33i01.33015861
Sequeira, A. M. M., Heupel, M. R., Lea, M. ‐A., Eguíluz, V. M., Duarte, C. M., Meekan, M. G., … Hays, G. C. (2019). The importance of sample size in marine megafauna tagging studies. Ecological Applications, 29(6). https://doi.org/10.1002/eap.1947
Rossbach, S., Saderne, V., Anton, A., & Duarte, C. M. (2019). Light-dependent calcification in Red Sea giant clam <i>Tridacna maxima</i> Biogeosciences, 16(13), 2635–2650. https://doi.org/10.5194/bg-16-2635-2019
Han, R., Bao, Z., Zeng, X., Niu, T., Zhang, F., Xu, M., & Gao, X. (2019). A joint method for marker-free alignment of tilt series in electron tomography. Bioinformatics, 35(14), i249–i259. https://doi.org/10.1093/bioinformatics/btz323
Duffy, J. E., Benedetti-Cecchi, L., Trinanes, J., Muller-Karger, F. E., Ambo-Rappe, R., Boström, C., … Yaakub, S. M. (2019). Toward a Coordinated Global Observing System for Seagrasses and Marine Macroalgae. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00317
Krause-Jensen, D., Sejr, M. K., Bruhn, A., Rasmussen, M. B., Christensen, P. B., Hansen, J. L. S., … Wegeberg, S. (2019). Deep Penetration of Kelps Offshore Along the West Coast of Greenland. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00375
Wilson, R. P., Börger, L., Holton, M. D., Scantlebury, D. M., Gómez‐Laich, A., Quintana, F., … Shepard, E. L. C. (2019). Estimates for energy expenditure in free‐living animals using acceleration proxies: A reappraisal. Journal of Animal Ecology, 89(1), 161–172. https://doi.org/10.1111/1365-2656.13040
Harcourt, R., Sequeira, A. M. M., Zhang, X., Roquet, F., Komatsu, K., Heupel, M., … Carroll, G. (2019). Animal-Borne Telemetry: An Integral Component of the Ocean Observing Toolkit. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00326
Sanz-Martín, M., Hendriks, I. E., Carstensen, J., Marbà, N., Krause-Jensen, D., Sejr, M. K., & Duarte, C. M. (2019). Continuous photoperiod of the Artic summer stimulates the photosynthetic response of some marine macrophytes. Aquatic Botany, 158, 103126. https://doi.org/10.1016/j.aquabot.2019.06.005
Ramajo, L., Lagos, N. A., & Duarte, C. M. (2019). Seagrass Posidonia oceanica diel pH fluctuations reduce the mortality of epiphytic forams under experimental ocean acidification. Marine Pollution Bulletin, 146, 247–254. https://doi.org/10.1016/j.marpolbul.2019.06.011
Ni, M., Zhuo, S., Iliescu, C., So, P. T. C., Mehta, J. S., Yu, H., & Hauser, C. A. E. (2019). Self‐assembling amyloid‐like peptides as exogenous second harmonic probes for bioimaging applications. Journal of Biophotonics, 12(12). https://doi.org/10.1002/jbio.201900065
Iuculano, F., Álverez-Salgado, X. A., Otero, J., Catalá, T. S., Sobrino, C., Duarte, C. M., & Agustí, S. (2019). Patterns and Drivers of UV Absorbing Chromophoric Dissolved Organic Matter in the Euphotic Layer of the Open Ocean. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00320
Bennett, S., Duarte, C. M., Marbà, N., & Wernberg, T. (2019). Integrating within-species variation in thermal physiology into climate change ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1778), 20180550. https://doi.org/10.1098/rstb.2018.0550
Martin, C., Agustí, S., & Duarte, C. M. (2019). Seasonality of marine plastic abundance in central Red Sea pelagic waters. Science of The Total Environment, 688, 536–541. https://doi.org/10.1016/j.scitotenv.2019.06.240
Siuly, S., & Zhang, X. (2019). Guest Editorial: Special issue on “Application of artificial intelligence in health research.” Health Information Science and Systems, 8(1). https://doi.org/10.1007/s13755-019-0089-x
Krause, J. W., Schulz, I. K., Rowe, K. A., Dobbins, W., Winding, M. H. S., Sejr, M. K., … Agustí, S. (2019). Silicic acid limitation drives bloom termination and potential carbon sequestration in an Arctic bloom. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-44587-4
Yahya, R. Z., Arrieta, J. M., Cusack, M., & Duarte, C. M. (2019). Airborne Prokaryote and Virus Abundance Over the Red Sea. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.01112
Garcias-Bonet, N., Delgado-Huertas, A., Carrillo-de-Albornoz, P., Anton, A., Almahasheer, H., Marbà, N., … Duarte, C. M. (2019). Carbon and Nitrogen Concentrations, Stocks, and Isotopic Compositions in Red Sea Seagrass and Mangrove Sediments. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00267
Arossa, S., Martin, C., Rossbach, S., & Duarte, C. M. (2019). Microplastic removal by Red Sea giant clam (Tridacna maxima). Environmental Pollution, 252, 1257–1266. https://doi.org/10.1016/j.envpol.2019.05.149
Mankowski, M. A., Kosztowski, M., Raghavan, S., Garonzik‐Wang, J. M., Axelrod, D., Segev, D. L., & Gentry, S. E. (2019). Accelerating kidney allocation: Simultaneously expiring offers. American Journal of Transplantation, 19(11), 3071–3078. https://doi.org/10.1111/ajt.15396
Geraldi, N. R., Ortega, A., Serrano, O., Macreadie, P. I., Lovelock, C. E., Krause-Jensen, D., … Duarte, C. M. (2019). Fingerprinting Blue Carbon: Rationale and Tools to Determine the Source of Organic Carbon in Marine Depositional Environments. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00263
Wang, W., Zhao, M., Gao, Z., Xu, G., Xian, H., Li, Y., & Zhang, X. (2019). Constructing Features for Detecting Android Malicious Applications: Issues, Taxonomy and Directions. IEEE Access, 7, 67602–67631. https://doi.org/10.1109/access.2019.2918139
Yang, Q., Li, Z., Liu, A., Liu, G., Zhao, L., Zhang, X., … Zhou, X. (2019). A novel hybrid publication recommendation system using compound information. World Wide Web, 22(6), 2499–2517. https://doi.org/10.1007/s11280-019-00687-9
Pu, J., Wang, Y., Liu, X., & Zhang, X. (2019). STLP-OD: Spatial and Temporal Label Propagation for Traffic Outlier Detection. IEEE Access, 7, 63036–63044. https://doi.org/10.1109/access.2019.2916853
Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2019). Metabolic Architecture of the Deep Ocean Microbiome. https://doi.org/10.1101/635680
Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2019). Metabolic Architecture of the Deep Ocean Microbiome. https://doi.org/10.1101/635680
Pei, S., Yu, L., Hoehndorf, R., & Zhang, X. (2019). Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference. The World Wide Web Conference on - WWW ’19. https://doi.org/10.1145/3308558.3313646
Berumen, M. L., Voolstra, C. R., Daffonchio, D., Agusti, S., Aranda, M., Irigoien, X., … Duarte, C. M. (2019). The Red Sea: Environmental Gradients Shape a Natural Laboratory in a Nascent Ocean. Coral Reefs of the World, 1–10. https://doi.org/10.1007/978-3-030-05802-9_1
Ruiz‐González, C., Logares, R., Sebastián, M., Mestre, M., Rodríguez‐Martínez, R., Galí, M., … Gasol, J. M. (2019). Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean. Molecular Ecology, 28(8), 1930–1945. https://doi.org/10.1111/mec.15026
Ruiz‐González, C., Logares, R., Sebastián, M., Mestre, M., Rodríguez‐Martínez, R., Galí, M., … Gasol, J. M. (2019). Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean. Molecular Ecology, 28(8), 1930–1945. https://doi.org/10.1111/mec.15026
Guan, Y., Ngugi, D. K., Vinu, M., Blom, J., Alam, I., Guillot, S., … Stingl, U. (2019). Comparative Genomics of the Genus Methanohalophilus, Including a Newly Isolated Strain From Kebrit Deep in the Red Sea. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00839
Wang, Y., Yu, G., Domeniconi, C., Wang, J., Zhang, X., & Guo, M. (2019). Selective Matrix Factorization for Multi-relational Data Fusion. Lecture Notes in Computer Science, 313–329. https://doi.org/10.1007/978-3-030-18576-3_19
Geraldi, N. R., Anton, A., Lovelock, C. E., & Duarte, C. M. (2019). Are the ecological effects of the “worst” marine invasive species linked with scientific and media attention? PLOS ONE, 14(4), e0215691. https://doi.org/10.1371/journal.pone.0215691
Anton, A., Geraldi, N. R., Lovelock, C. E., Apostolaki, E. T., Bennett, S., Cebrian, J., … Duarte, C. M. (2019). Global ecological impacts of marine exotic species. Nature Ecology & Evolution, 3(5), 787–800. https://doi.org/10.1038/s41559-019-0851-0
Jamil, M., Kountche, B. A., Haider, I., Wang, J. Y., Aldossary, F., Zarban, R. A., … Al-Babili, S. (2019). Methylation at the C-3′ in D-Ring of Strigolactone Analogs Reduces Biological Activity in Root Parasitic Plants and Rice. Frontiers in Plant Science, 10. https://doi.org/10.3389/fpls.2019.00353
Regaudie-de-Gioux, A., Huete-Ortega, M., Sobrino, C., López-Sandoval, D. C., González, N., Fernández-Carrera, A., … Duarte, C. M. (2019). Multi-model remote sensing assessment of primary production in the subtropical gyres. Journal of Marine Systems, 196, 97–106. https://doi.org/10.1016/j.jmarsys.2019.03.007
Sun, G., & Zhang, X. (2019). A Novel Framework for Node/Edge Attributed Graph Embedding. Lecture Notes in Computer Science, 169–182. https://doi.org/10.1007/978-3-030-16142-2_14
Vaqué, D., Lara, E., Arrieta, J. M., Holding, J., Sà, E. L., Hendriks, I. E., … Duarte, C. M. (2019). Warming and CO2 Enhance Arctic Heterotrophic Microbial Activity. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00494
Carstensen, J., & Duarte, C. M. (2019). Drivers of pH Variability in Coastal Ecosystems. Environmental Science & Technology, 53(8), 4020–4029. https://doi.org/10.1021/acs.est.8b03655
Hays, G. C., Bailey, H., Bograd, S. J., Bowen, W. D., Campagna, C., Carmichael, R. H., … Sequeira, A. M. M. (2019). Translating Marine Animal Tracking Data into Conservation Policy and Management. Trends in Ecology & Evolution, 34(5), 459–473. https://doi.org/10.1016/j.tree.2019.01.009
Burkholz, C., Duarte, C., & Garcias-Bonet, N. (2019). Thermal dependence of seagrass ecosystem metabolism in the Red Sea. Marine Ecology Progress Series, 614, 79–90. https://doi.org/10.3354/meps12912
Saderne, V., Geraldi, N. R., Macreadie, P. I., Maher, D. T., Middelburg, J. J., Serrano, O., … Duarte, C. M. (2019). Role of carbonate burial in Blue Carbon budgets. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-08842-6
Lovelock, C. E., & Duarte, C. M. (2019). Dimensions of Blue Carbon and emerging perspectives. Biology Letters, 15(3), 20180781. https://doi.org/10.1098/rsbl.2018.0781
Ashok, A., Cusack, M., Saderne, V., Krishnakumar, P. K., Rabaoui, L., Qurban, M. A., … Agustí, S. (2019). Accelerated burial of petroleum hydrocarbons in Arabian Gulf blue carbon repositories. Science of The Total Environment, 669, 205–212. https://doi.org/10.1016/j.scitotenv.2019.01.437
Liu, X., Liu, J., Zhu, S., Wang, W., & Zhang, X. (2020). Privacy Risk Analysis and Mitigation of Analytics Libraries in the Android Ecosystem. IEEE Transactions on Mobile Computing, 19(5), 1184–1199. https://doi.org/10.1109/tmc.2019.2903186
Liu, X., Liu, J., Zhu, S., Wang, W., & Zhang, X. (2020). Privacy Risk Analysis and Mitigation of Analytics Libraries in the Android Ecosystem. IEEE Transactions on Mobile Computing, 19(5), 1184–1199. https://doi.org/10.1109/tmc.2019.2903186
Palmer, E. E., Hong, S., Al Zahrani, F., Hashem, M. O., Aleisa, F. A., Ahmed, H. M. J., … Arold, S. T. (2019). De Novo Variants Disrupting the HX Repeat Motif of ATN1 Cause a Recognizable Non-Progressive Neurocognitive Syndrome. The American Journal of Human Genetics, 104(3), 542–552. https://doi.org/10.1016/j.ajhg.2019.01.013
Kafkas, Ş., & Hoehndorf, R. (2019). Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. Database, 2019. https://doi.org/10.1093/database/baz019
Tse, C. K. M., Xu, J., Xu, L., Sheong, F. K., Wang, S., Chow, H. Y., … Huang, X. (2019). Intrinsic cleavage of RNA polymerase II adopts a nucleobase-independent mechanism assisted by transcript phosphate. Nature Catalysis, 2(3), 228–235. https://doi.org/10.1038/s41929-019-0227-5
Boudellioua, I., Kulmanov, M., Schofield, P. N., Gkoutos, G. V., & Hoehndorf, R. (2019). DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinformatics, 20(1). https://doi.org/10.1186/s12859-019-2633-8
Smaili, F. Z., Gao, X., & Hoehndorf, R. (2019). Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. https://doi.org/10.1101/536649
Shaikh, S. F., Mazo-Mantilla, H. F., Qaiser, N., Khan, S. M., Nassar, J. M., Geraldi, N. R., … Hussain, M. M. (2019). Noninvasive Featherlight Wearable Compliant “Marine Skin”: Standalone Multisensory System for Deep-Sea Environmental Monitoring. Small, 15(10), 1804385. https://doi.org/10.1002/smll.201804385
Zhang, W., Ding, W., Li, Y.-X., Tam, C., Bougouffa, S., Wang, R., … Qian, P.-Y. (2019). Marine biofilms constitute a bank of hidden microbial diversity and functional potential. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-08463-z
Akujuobi, U., Yufei, H., Zhang, Q., & Zhang, X. (2019). Collaborative Graph Walk for Semi-Supervised Multi-label Node Classification. 2019 IEEE International Conference on Data Mining (ICDM). https://doi.org/10.1109/icdm.2019.00010
Liu, X., Li, Z., Wang, J., Yu, G., Domenicon, C., & Zhang, X. (2019). Cross-Modal Zero-Shot Hashing. 2019 IEEE International Conference on Data Mining (ICDM). https://doi.org/10.1109/icdm.2019.00055
Meng, Z., Liang, S., Bao, H., & Zhang, X. (2019). Co-Embedding Attributed Networks. Proceedings of the Twelfth ACM International Conference on Web Search and Data Mining. https://doi.org/10.1145/3289600.3291015
WILSON, R. P., HOLTON, M., WILSON, V. L., GUNNER, R., TYSSE, B., WILSON, G. I., … SCANTLEBURY, D. M. (2019). Towards informed metrics for examining the role of human-induced animal responses in tag studies on wild animals. Integrative Zoology, 14(1), 17–29. https://doi.org/10.1111/1749-4877.12328
Martin, C., Almahasheer, H., & Duarte, C. M. (2019). Mangrove forests as traps for marine litter. Environmental Pollution, 247, 499–508. https://doi.org/10.1016/j.envpol.2019.01.067
Garcias-Bonet, N., Vaquer-Sunyer, R., Duarte, C. M., & Marbà, N. (2019). Warming effect on nitrogen fixation in Mediterranean macrophyte sediments. Biogeosciences, 16(1), 167–175. https://doi.org/10.5194/bg-16-167-2019
Agusti, S., Lubián, L. M., Moreno-Ostos, E., Estrada, M., & Duarte, C. M. (2019). Projected Changes in Photosynthetic Picoplankton in a Warmer Subtropical Ocean. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00506
N’Doye, I., Asiri, S., Aloufi, A., Asem Al-Awan, A., & Laleg-Kirati, T.-M. (2020). Intelligent Proportional–Integral–Derivative Control-Based Modulating Functions for Laser Beam Pointing and Stabilization. IEEE Transactions on Control Systems Technology, 28(3), 1001–1008. https://doi.org/10.1109/tcst.2018.2884197
López‐Sandoval, D. C., Delgado‐Huertas, A., Carrillo‐de‐Albornoz, P., Duarte, C. M., & Agustí, S. (2019). Use of cavity ring‐down spectrometry to quantify 13 C‐primary productivity in oligotrophic waters. Limnology and Oceanography: Methods, 17(2), 137–144. https://doi.org/10.1002/lom3.10305
Wang, G., Yin, H., Li, B., Yu, C., Wang, F., Xu, X., … Zhang, Z. (2019). Characterization and identification of long non-coding RNAs based on feature relationship. Bioinformatics, 35(17), 2949–2956. https://doi.org/10.1093/bioinformatics/btz008

2018

Shahul Hameed, U. F., Liao, C., Radhakrishnan, A. K., Huser, F., Aljedani, S. S., Zhao, X., … Arold, S. T. (2018). H-NS uses an autoinhibitory conformational switch for environment-controlled gene silencing. Nucleic Acids Research, 47(5), 2666–2680. https://doi.org/10.1093/nar/gky1299
Alazmi, M., Kuwahara, H., Soufan, O., Ding, L., & Gao, X. (2018). Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions. Bioinformatics, 35(15), 2634–2643. https://doi.org/10.1093/bioinformatics/bty1035
Kleftogiannis, D., Ashoor, H., & Bajic, V. B. (2018). TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers. Genomics, Proteomics & Bioinformatics, 16(5), 332–341. https://doi.org/10.1016/j.gpb.2018.05.003
Akal, A. L., Karan, R., Hohl, A., Alam, I., Vogler, M., Grötzinger, S. W., … Rueping, M. (2018). A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool. FEBS Open Bio, 9(2), 194–205. https://doi.org/10.1002/2211-5463.12557
Dooley, D. M., Griffiths, E. J., Gosal, G. S., Buttigieg, P. L., Hoehndorf, R., Lange, M. C., … Hsiao, W. W. L. (2018). FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration. Npj Science of Food, 2(1). https://doi.org/10.1038/s41538-018-0032-6
Wang, P., Zhao, J., Zhang, X., Tao, J., & Guan, X. (2018). SNOD: a fast sampling method of exploring node orbit degrees for large graphs. Knowledge and Information Systems, 61(1), 301–326. https://doi.org/10.1007/s10115-018-1301-z
Almahasheer, H., Serrano, O., Duarte, C. M., & Irigoien, X. (2018). Remobilization of Heavy Metals by Mangrove Leaves. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00484
Lee, M. A., Nguyen, F. T., Scott, K., Chan, N. Y. L., Bakh, N. A., Jones, K. K., … Strano, M. S. (2018). Implanted Nanosensors in Marine Organisms for Physiological Biologging: Design, Feasibility, and Species Variability. ACS Sensors, 4(1), 32–43. https://doi.org/10.1021/acssensors.8b00538
Garcias-Bonet, N., Fusi, M., Ali, M., Shaw, D. R., Saikaly, P. E., Daffonchio, D., & Duarte, C. M. (2018). High denitrification and anaerobic ammonium oxidation contributes to net nitrogen loss in a seagrass ecosystem in the central Red Sea. Biogeosciences, 15(23), 7333–7346. https://doi.org/10.5194/bg-15-7333-2018
Duarte, C. M., & Krause-Jensen, D. (2018). Intervention Options to Accelerate Ecosystem Recovery From Coastal Eutrophication. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00470
Pitt, K. A., Lucas, C. H., Condon, R. H., Duarte, C. M., & Stewart-Koster, B. (2018). Claims That Anthropogenic Stressors Facilitate Jellyfish Blooms Have Been Amplified Beyond the Available Evidence: A Systematic Review. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00451
Unsworth, R. K. F., McKenzie, L. J., Collier, C. J., Cullen-Unsworth, L. C., Duarte, C. M., Eklöf, J. S., … Nordlund, L. M. (2018). Global challenges for seagrass conservation. Ambio, 48(8), 801–815. https://doi.org/10.1007/s13280-018-1115-y
Arias-Ortiz, A., Masqué, P., Garcia-Orellana, J., Serrano, O., Mazarrasa, I., Marbà, N., … Duarte, C. M. (2018). Reviews and syntheses: <sup>210</sup>Pb-derived sediment and carbon accumulation rates in vegetated coastal ecosystems – setting the record straight. Biogeosciences, 15(22), 6791–6818. https://doi.org/10.5194/bg-15-6791-2018
Shashi, V., Magiera, M. M., Klein, D., Zaki, M., Schoch, K., Rudnik‐Schöneborn, S., … Yuan, X. (2018). Loss of tubulin deglutamylase CCP 1 causes infantile‐onset neurodegeneration. The EMBO Journal, 37(23). https://doi.org/10.15252/embj.2018100540
Smaili, F. Z., Gao, X., & Hoehndorf, R. (2018). OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. Bioinformatics, 35(12), 2133–2140. https://doi.org/10.1093/bioinformatics/bty933
Smaili, F. Z., Gao, X., & Hoehndorf, R. (2018). OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. Bioinformatics, 35(12), 2133–2140. https://doi.org/10.1093/bioinformatics/bty933
Krause, J. W., Duarte, C. M., Marquez, I. A., Assmy, P., Fernández-Méndez, M., Wiedmann, I., … Agustí, S. (2018). Biogenic silica production and diatom dynamics in the Svalbard region during spring. Biogeosciences, 15(21), 6503–6517. https://doi.org/10.5194/bg-15-6503-2018
Tovar-Sánchez, A., González-Ortegón, E., & Duarte, C. M. (2019). Trace metal partitioning in the top meter of the ocean. Science of The Total Environment, 652, 907–914. https://doi.org/10.1016/j.scitotenv.2018.10.315
Kaidarova, A., Marengo, M., Marinaro, G., Geraldi, N., Duarte, C. M., & Kosel, J. (2018). Flexible and Biofouling Independent Salinity Sensor. Advanced Materials Interfaces, 5(23), 1801110. https://doi.org/10.1002/admi.201801110
Ogura, A., Akizuki, Y., Imoda, H., Mineta, K., Gojobori, T., & Nagai, S. (2018). Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom. BMC Genomics, 19(1). https://doi.org/10.1186/s12864-018-5144-5
Ma, L., Cao, J., Liu, L., Du, Q., Li, Z., Zou, D., … Zhang, Z. (2018). LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Research, 47(D1), D128–D134. https://doi.org/10.1093/nar/gky960
Serrano, O., Almahasheer, H., Duarte, C. M., & Irigoien, X. (2018). Carbon stocks and accumulation rates in Red Sea seagrass meadows. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-33182-8
Steckbauer, A., Díaz-Gil, C., Alós, J., Catalán, I. A., & Duarte, C. M. (2018). Predator Avoidance in the European Seabass After Recovery From Short-Term Hypoxia and Different CO2 Conditions. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00350
González‐Wangüemert, M., Basso, L., Balau, A., Costa, J., Renault, L., Serrão, E. A., … Hendriks, I. E. (2018). Gene pool and connectivity patterns of Pinna nobilis in the Balearic Islands (Spain, Western Mediterranean Sea): Implications for its conservation through restocking. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(2), 175–188. https://doi.org/10.1002/aqc.2976
Gattuso, J.-P., Magnan, A. K., Bopp, L., Cheung, W. W. L., Duarte, C. M., Hinkel, J., … Rau, G. H. (2018). Ocean Solutions to Address Climate Change and Its Effects on Marine Ecosystems. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00337
Razali, R., Bougouffa, S., Morton, M. J. L., Lightfoot, D. J., Alam, I., Essack, M., … Negrão, S. (2018). The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.01402
Boudellioua, I., Kulmanov, M., Schofield, P. N., Gkoutos, G. V., & Hoehndorf, R. (2018). OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-32876-3
Schofield, P., Elmore, S., Cardiff, R., Cesta, M., Gkoutos, G., Helton, E., Hoehndorf, R., Keenan, C., McKerlie, C., & Sundberg, J. (2018). All in the Name: A Review of Current Standards and the Evolution of Histopathological Nomenclature for Laboratory Animals. Apollo - University of Cambridge Repository. https://doi.org/10.17863/CAM.30296
Young, M. A., Macreadie, P. I., Duncan, C., Carnell, P. E., Nicholson, E., Serrano, O., … Ierodiaconou, D. (2018). Optimal soil carbon sampling designs to achieve cost-effectiveness: a case study in blue carbon ecosystems. Biology Letters, 14(9), 20180416. https://doi.org/10.1098/rsbl.2018.0416
Marbà, N., Krause-Jensen, D., Masqué, P., & Duarte, C. M. (2018). Expanding Greenland seagrass meadows contribute new sediment carbon sinks. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-32249-w
Gu, J., Luo, M., Zhang, X., Christakos, G., Agusti, S., Duarte, C. M., & Wu, J. (2018). Losses of salt marsh in China: Trends, threats and management. Estuarine, Coastal and Shelf Science, 214, 98–109. https://doi.org/10.1016/j.ecss.2018.09.015
Shaheen, R., Maddirevula, S., Ewida, N., Alsahli, S., Abdel-Salam, G. M. H., Zaki, M. S., … Alkuraya, F. S. (2018). Genomic and phenotypic delineation of congenital microcephaly. Genetics in Medicine, 21(3), 545–552. https://doi.org/10.1038/s41436-018-0140-3
Hayase, S., Wang, H., Ohgushi, E., Kobayashi, M., Mori, C., Horita, H., … Wada, K. (2018). Vocal practice regulates singing activity–dependent genes underlying age-independent vocal learning in songbirds. PLOS Biology, 16(9), e2006537. https://doi.org/10.1371/journal.pbio.2006537
Lehmann, R., Lightfoot, D. J., Schunter, C., Michell, C. T., Ohyanagi, H., Mineta, K., … Ravasi, T. (2018). Finding Nemo’s Genes: A chromosome‐scale reference assembly of the genome of the orange clownfish Amphiprion percula. Molecular Ecology Resources, 19(3), 570–585. https://doi.org/10.1111/1755-0998.12939
Alshahrani, M., & Hoehndorf, R. (2018). Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. Bioinformatics, 34(17), i901–i907. https://doi.org/10.1093/bioinformatics/bty559
Kulmanov, M., Schofield, P. N., Gkoutos, G. V., & Hoehndorf, R. (2018). Ontology-based validation and identification of regulatory phenotypes. Bioinformatics, 34(17), i857–i865. https://doi.org/10.1093/bioinformatics/bty605
Kordopati, V., Salhi, A., Razali, R., Radovanovic, A., Tifratene, F., Uludag, M., … Bajic, V. B. (2018). DES-Mutation: System for Exploring Links of Mutations and Diseases. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-31439-w
Linn, S. C., Mustonen, A. M., Silva, K. A., Kennedy, V. E., Sundberg, B. A., Bechtold, L. S., … Sundberg, J. P. (2018). Nail abnormalities identified in an ageing study of 30 inbred mouse strains. Experimental Dermatology, 28(4), 383–390. https://doi.org/10.1111/exd.13759
Sea, M. A., Garcias-Bonet, N., Saderne, V., & Duarte, C. M. (2018). Carbon dioxide and methane fluxes at the air–sea interface of Red Sea mangroves. Biogeosciences, 15(17), 5365–5375. https://doi.org/10.5194/bg-15-5365-2018
Kalkatawi, M., Magana-Mora, A., Jankovic, B., & Bajic, V. B. (2018). DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions. Bioinformatics, 35(7), 1125–1132. https://doi.org/10.1093/bioinformatics/bty752
Duarte, C. M., Delgado-Huertas, A., Anton, A., Carrillo-de-Albornoz, P., López-Sandoval, D. C., Agustí, S., … Garcias-Bonet, N. (2018). Stable Isotope (δ13C, δ15N, δ18O, δD) Composition and Nutrient Concentration of Red Sea Primary Producers. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00298
Shahul Hameed, U. F., Sanislav, O., Lay, S. T., Annesley, S. J., Jobichen, C., Fisher, P. R., … Arold, S. T. (2018). Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA. Cell Reports, 24(8), 1996–2004. https://doi.org/10.1016/j.celrep.2018.07.075
Rehman, Z. ur, Alam, I., Kamau, A. A., Bajic, V. B., & Leiknes, T. (2018). Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites. Biotechnology Reports, 19, e00278. https://doi.org/10.1016/j.btre.2018.e00278
Wilson, R. P., Holton, M. D., Virgilio, A., Williams, H., Shepard, E. L. C., Lambertucci, S., … Duarte, C. M. (2018). Give the machine a hand: A Boolean time‐based decision‐tree template for rapidly finding animal behaviours in multisensor data. Methods in Ecology and Evolution, 9(11), 2206–2215. https://doi.org/10.1111/2041-210x.13069
Krause-Jensen, D., Serrano, O., Apostolaki, E. T., Gregory, D. J., & Duarte, C. M. (2018). Seagrass sedimentary deposits as security vaults and time capsules of the human past. Ambio, 48(4), 325–335. https://doi.org/10.1007/s13280-018-1083-2
Motwalli, O., Essack, M., Salhi, A., Hanks, J., Mijakovic, I., & Bajic, V. B. (2018). BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria. PLOS ONE, 13(8), e0202002. https://doi.org/10.1371/journal.pone.0202002
Duarte, C. M., Poiner, I., & Gunn, J. (2018). Perspectives on a Global Observing System to Assess Ocean Health. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00265
Chefaoui, R. M., Duarte, C. M., & Serrão, E. A. (2018). Dramatic loss of seagrass habitat under projected climate change in the Mediterranean Sea. Global Change Biology, 24(10), 4919–4928. https://doi.org/10.1111/gcb.14401
Khan, A. O., Patel, N., Ghazi, N. G., Alzahrani, S. S., Arold, S. T., & Alkuraya, F. S. (2018). Familial non-syndromic macular pseudocoloboma secondary to homozygous CLDN19 mutation. Ophthalmic Genetics, 39(5), 577–583. https://doi.org/10.1080/13816810.2018.1498528
Shahul Hameed, U., Haider, I., Jamil, M., Kountche, B. A., Guo, X., Zarban, R. A., … Arold, S. T. (2018). Structural basis for specific inhibition of the highly sensitive Sh HTL 7 receptor. EMBO Reports, 19(9). https://doi.org/10.15252/embr.201745619
Bermejo, R., Chefaoui, R. M., Engelen, A. H., Buonomo, R., Neiva, J., Ferreira-Costa, J., … Serrão, E. A. (2018). Marine forests of the Mediterranean-Atlantic Cystoseira tamariscifolia complex show a southern Iberian genetic hotspot and no reproductive isolation in parapatry. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-28811-1
Sanz-Martín, M., Chierici, M., Mesa, E., Carrillo-de-Albornoz, P., Delgado-Huertas, A., Agustí, S., … Duarte, C. M. (2018). Episodic Arctic CO2 Limitation in the West Svalbard Shelf. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00221
Mestre, M., Ruiz-González, C., Logares, R., Duarte, C. M., Gasol, J. M., & Sala, M. M. (2018). Sinking particles promote vertical connectivity in the ocean microbiome. Proceedings of the National Academy of Sciences, 115(29), E6799–E6807. https://doi.org/10.1073/pnas.1802470115
Behzad, H., Mineta, K., & Gojobori, T. (2018). Global Ramifications of Dust and Sandstorm Microbiota. Genome Biology and Evolution, 10(8), 1970–1987. https://doi.org/10.1093/gbe/evy134
Ramajo, L., Hendriks, I. E., Lagos, N. A., Krause-Jensen, D., Marbà, N., Sejr, M. K., & Duarte, C. M. (2018). Reply to “Increased food supply mitigates ocean acidification effects on calcification but exacerbates effects on growth.” Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-27670-0
Cusack, M., Saderne, V., Arias-Ortiz, A., Masqué, P., Krishnakumar, P. K., Rabaoui, L., … Duarte, C. M. (2018). Organic carbon sequestration and storage in vegetated coastal habitats along the western coast of the Arabian Gulf. Environmental Research Letters, 13(7), 074007. https://doi.org/10.1088/1748-9326/aac899
Smaili, F. Z., Gao, X., & Hoehndorf, R. (2018). Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. Bioinformatics, 34(13), i52–i60. https://doi.org/10.1093/bioinformatics/bty259
Agusti, S., Vigoya, L., & Duarte, C. M. (2018). Annual plankton community metabolism in estuarine and coastal waters in Perth (Western Australia). PeerJ, 6, e5081. https://doi.org/10.7717/peerj.5081
Krause-Jensen, D., Lavery, P., Serrano, O., Marbà, N., Masque, P., & Duarte, C. M. (2018). Sequestration of macroalgal carbon: the elephant in the Blue Carbon room. Biology Letters, 14(6), 20180236. https://doi.org/10.1098/rsbl.2018.0236
Fontanini, A., Steckbauer, A., Dupont, S., & Duarte, C. M. (2018). Variable metabolic responses of Skagerrak invertebrates to low O<sub>2</sub> and high CO<sub>2</sub> scenarios. Biogeosciences, 15(12), 3717–3729. https://doi.org/10.5194/bg-15-3717-2018
Kaidarova, A., Khan, M. A., Amara, S., Geraldi, N. R., Karimi, M. A., Shamim, A., … Kosel, J. (2018). Tunable, Flexible Composite Magnets for Marine Monitoring Applications. Advanced Engineering Materials, 20(9), 1800229. https://doi.org/10.1002/adem.201800229
Almahasheer, H., Duarte, C. M., & Irigoien, X. (2018). Leaf Nutrient Resorption and Export Fluxes of Avicennia marina in the Central Red Sea Area. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00204
Naser, R., Aldehaiman, A., Díaz-Galicia, E., & Arold, S. (2018). Endogenous Control Mechanisms of FAK and PYK2 and Their Relevance to Cancer Development. Cancers, 10(6), 196. https://doi.org/10.3390/cancers10060196
Pinedo-González, P., West, A. J., Tovar-Sanchez, A., Duarte, C. M., & Sañudo-Wilhelmy, S. A. (2018). Concentration and isotopic composition of dissolved Pb in surface waters of the modern global ocean. Geochimica et Cosmochimica Acta, 235, 41–54. https://doi.org/10.1016/j.gca.2018.05.005
Zheng, Y., Duarte, C. M., Chen, J., Li, D., Lou, Z., & Wu, J. (2018). Remote sensing mapping of macroalgal farms by modifying thresholds in the classification tree. Geocarto International, 34(10), 1098–1108. https://doi.org/10.1080/10106049.2018.1474272
Duarte, B., Martins, I., Rosa, R., Matos, A. R., Roleda, M. Y., Reusch, T. B. H., … Jueterbock, A. (2018). Climate Change Impacts on Seagrass Meadows and Macroalgal Forests: An Integrative Perspective on Acclimation and Adaptation Potential. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00190
Giralt, A., de Pins, B., Cifuentes-Díaz, C., López-Molina, L., Farah, A. T., Tible, M., … Girault, J.-A. (2018). PTK2B/Pyk2 overexpression improves a mouse model of Alzheimer’s disease. Experimental Neurology, 307, 62–73. https://doi.org/10.1016/j.expneurol.2018.05.020
Saderne, V., Cusack, M., Almahasheer, H., Serrano, O., Masqué, P., Arias‐Ortiz, A., … Duarte, C. M. (2018). Accumulation of Carbonates Contributes to Coastal Vegetated Ecosystems Keeping Pace With Sea Level Rise in an Arid Region (Arabian Peninsula). Journal of Geophysical Research: Biogeosciences, 123(5), 1498–1510. https://doi.org/10.1029/2017jg004288
Martin, C., Parkes, S., Zhang, Q., Zhang, X., McCabe, M. F., & Duarte, C. M. (2018). Use of unmanned aerial vehicles for efficient beach litter monitoring. Marine Pollution Bulletin, 131, 662–673. https://doi.org/10.1016/j.marpolbul.2018.04.045
Nassar, J. M., Khan, S. M., Velling, S. J., Diaz-Gaxiola, A., Shaikh, S. F., Geraldi, N. R., … Hussain, M. M. (2018). Compliant lightweight non-invasive standalone “Marine Skin” tagging system. Npj Flexible Electronics, 2(1). https://doi.org/10.1038/s41528-018-0025-1
Rashid, J., Kobiyama, A., Reza, M. S., Yamada, Y., Ikeda, Y., Ikeda, D., … Watabe, S. (2018). Seasonal changes in the communities of photosynthetic picoeukaryotes in Ofunato Bay as revealed by shotgun metagenomic sequencing. Gene, 665, 127–132. https://doi.org/10.1016/j.gene.2018.04.071
Kobiyama, A., Ikeo, K., Reza, M. S., Rashid, J., Yamada, Y., Ikeda, Y., … Watabe, S. (2018). Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay. Gene, 665, 149–154. https://doi.org/10.1016/j.gene.2018.04.073
Reza, M. S., Kobiyama, A., Yamada, Y., Ikeda, Y., Ikeda, D., Mizusawa, N., … Watabe, S. (2018). Taxonomic profiles in metagenomic analyses of free-living microbial communities in the Ofunato Bay. Gene, 665, 192–200. https://doi.org/10.1016/j.gene.2018.04.075
Kudo, T., Kobiyama, A., Rashid, J., Reza, M. S., Yamada, Y., Ikeda, Y., … Watabe, S. (2018). Seasonal changes in the abundance of bacterial genes related to dimethylsulfoniopropionate catabolism in seawater from Ofunato Bay revealed by metagenomic analysis. Gene, 665, 174–184. https://doi.org/10.1016/j.gene.2018.04.072
Reza, M. S., Kobiyama, A., Yamada, Y., Ikeda, Y., Ikeda, D., Mizusawa, N., … Watabe, S. (2018). Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay. Gene, 665, 185–191. https://doi.org/10.1016/j.gene.2018.04.074
Baalkhuyur, F. M., Bin Dohaish, E.-J. A., Elhalwagy, M. E. A., Alikunhi, N. M., AlSuwailem, A. M., Røstad, A., … Duarte, C. M. (2018). Microplastic in the gastrointestinal tract of fishes along the Saudi Arabian Red Sea coast. Marine Pollution Bulletin, 131, 407–415. https://doi.org/10.1016/j.marpolbul.2018.04.040
Duarte, C. M., Riker, P., Srinivasan, M., Robinson, P. W., Gallo-Reynoso, J. P., & Costa, D. P. (2018). Sonification of Animal Tracks as an Alternative Representation of Multi-Dimensional Data: A Northern Elephant Seal Example. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00128
Wang, W., Liu, A., Li, Z., Zhang, X., Li, Q., & Zhou, X. (2018). Protecting multi-party privacy in location-aware social point-of-interest recommendation. World Wide Web, 22(2), 863–883. https://doi.org/10.1007/s11280-018-0550-9
Wesselmann, M., González-Wangüemert, M., Serrão, E. A., Engelen, A. H., Renault, L., García-March, J. R., … Hendriks, I. E. (2018). Genetic and oceanographic tools reveal high population connectivity and diversity in the endangered pen shell Pinna nobilis. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-23004-2
Arias-Ortiz, A., Serrano, O., Masqué, P., Lavery, P. S., Mueller, U., Kendrick, G. A., … Duarte, C. M. (2018). A marine heatwave drives massive losses from the world’s largest seagrass carbon stocks. Nature Climate Change, 8(4), 338–344. https://doi.org/10.1038/s41558-018-0096-y
Younis, S., Weiland, C., Hoehndorf, R., Dressler, S., Hickler, T., Seeger, B., & Schmidt, M. (2018). Taxon and trait recognition from digitized herbarium specimens using deep convolutional neural networks. Botany Letters, 165(3-4), 377–383. https://doi.org/10.1080/23818107.2018.1446357
Alam, T., Alazmi, M., Naser, R., Huser, F., Momin, A. A., Walkiewicz, K. W., … Arold, S. T. (2018). Proteome-level assessment of origin, prevalence and function of Leucine-Aspartic Acid (LD) motifs. https://doi.org/10.1101/278903
Anton, A., Hendriks, I. E., Marbà, N., Krause-Jensen, D., Garcias-Bonet, N., & Duarte, C. M. (2018). Iron Deficiency in Seagrasses and Macroalgae in the Red Sea Is Unrelated to Latitude and Physiological Performance. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00074
Al Rowaihi, I. S., Kick, B., Grötzinger, S. W., Burger, C., Karan, R., Weuster-Botz, D., … Arold, S. T. (2018). A two-stage biological gas to liquid transfer process to convert carbon dioxide into bioplastic. Bioresource Technology Reports, 1, 61–68. https://doi.org/10.1016/j.biteb.2018.02.007
Sequeira, A. M. M., Rodríguez, J. P., Eguíluz, V. M., Harcourt, R., Hindell, M., Sims, D. W., … Ferreira, L. C. (2018). Convergence of marine megafauna movement patterns in coastal and open oceans. Proceedings of the National Academy of Sciences, 115(12), 3072–3077. https://doi.org/10.1073/pnas.1716137115
Hays, G. C., Alcoverro, T., Christianen, M. J. A., Duarte, C. M., Hamann, M., Macreadie, P. I., … Esteban, N. (2018). New Tools to Identify the Location of Seagrass Meadows: Marine Grazers as Habitat Indicators. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00009
Handberg-Thorsager, M., Gutierrez-Mazariegos, J., Arold, S. T., Kumar Nadendla, E., Bertucci, P. Y., Germain, P., … Schubert, M. (2018). The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation. Science Advances, 4(2), eaao1261. https://doi.org/10.1126/sciadv.aao1261
Manzoor, S., Bilal, A., Khan, S., Ullah, R., Iftikhar, S., Emwas, A.-H., … Faisal, A. (2018). Identification and characterization of SSE15206, a microtubule depolymerizing agent that overcomes multidrug resistance. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-21642-0
Mazarrasa, I., Samper-Villarreal, J., Serrano, O., Lavery, P. S., Lovelock, C. E., Marbà, N., … Cortés, J. (2018). Habitat characteristics provide insights of carbon storage in seagrass meadows. Marine Pollution Bulletin, 134, 106–117. https://doi.org/10.1016/j.marpolbul.2018.01.059
Thums, M., Fernández-Gracia, J., Sequeira, A. M. M., Eguíluz, V. M., Duarte, C. M., & Meekan, M. G. (2018). How Big Data Fast Tracked Human Mobility Research and the Lessons for Animal Movement Ecology. Frontiers in Marine Science, 5. https://doi.org/10.3389/fmars.2018.00021
Takahashi, M., Takahashi, E., Joudeh, L. I., Marini, M., Das, G., Elshenawy, M. M., … Hamdan, S. M. (2018). Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep‐sea brines of the Red Sea. The FASEB Journal, 32(6), 3346–3360. https://doi.org/10.1096/fj.201700862rr
Duarte, C. M., & Krause-Jensen, D. (2018). Greenland Tidal Pools as Hot Spots for Ecosystem Metabolism and Calcification. Estuaries and Coasts, 41(5), 1314–1321. https://doi.org/10.1007/s12237-018-0368-9
Villarino, E., Watson, J. R., Jönsson, B., Gasol, J. M., Salazar, G., Acinas, S. G., … Chust, G. (2018). Large-scale ocean connectivity and planktonic body size. Nature Communications, 9(1). https://doi.org/10.1038/s41467-017-02535-8
Rodríguez-García, M. Á., & Hoehndorf, R. (2018). Inferring ontology graph structures using OWL reasoning. BMC Bioinformatics, 19(1). https://doi.org/10.1186/s12859-017-1999-8
Abdel-Haleem, A. M., Hefzi, H., Mineta, K., Gao, X., Gojobori, T., Palsson, B. O., … Jamshidi, N. (2018). Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. PLOS Computational Biology, 14(1), e1005895. https://doi.org/10.1371/journal.pcbi.1005895

2017

Jamil, M., Kountche, B. A., Haider, I., Guo, X., Ntui, V. O., Jia, K.-P., … Al-Babili, S. (2017). Methyl phenlactonoates are efficient strigolactone analogs with simple structure. Journal of Experimental Botany, 69(9), 2319–2331. https://doi.org/10.1093/jxb/erx438
Pandit, S., Ravikumar, V., Abdel-Haleem, A. M., Derouiche, A., Mokkapati, V. R. S. S., Sihlbom, C., … Mijakovic, I. (2017). Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.02599
Kafkas, Ş., Sarntivijai, S., & Hoehndorf, R. (2017). Usage of cell nomenclature in biomedical literature. BMC Bioinformatics, 18(S17). https://doi.org/10.1186/s12859-017-1978-0
Rodríguez-García, M. Á., Gkoutos, G. V., Schofield, P. N., & Hoehndorf, R. (2017). Integrating phenotype ontologies with PhenomeNET. Journal of Biomedical Semantics, 8(1). https://doi.org/10.1186/s13326-017-0167-4
Grötzinger, S. W., Karan, R., Strillinger, E., Bader, S., Frank, A., Al Rowaihi, I. S., … Arold, S. T. (2017). Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes. ACS Chemical Biology, 13(1), 161–170. https://doi.org/10.1021/acschembio.7b00792
Fan, M., He, T., Zhang, P., Cheng, H., Zhang, J., Gao, X., & Li, L. (2017). Diffusion-weighted imaging features of breast tumours and the surrounding stroma reflect intrinsic heterogeneous characteristics of molecular subtypes in breast cancer. NMR in Biomedicine, 31(2), e3869. https://doi.org/10.1002/nbm.3869
Mechhoud, S., & Laleg-Kirati, T.-M. (2018). Adaptive energy-based bilinear control of first-order 1-D hyperbolic PDEs: Application to a one-loop parabolic solar collector trough. Journal of the Franklin Institute, 355(2), 827–848. https://doi.org/10.1016/j.jfranklin.2017.12.003
Hoehndorf, R., & Queralt-Rosinach, N. (2017). Data Science and symbolic AI: Synergies, challenges and opportunities [JB]. Data Science, 1(1–2), 27–38. https://doi.org/10.3233/DS-170004
Suen, K. M., Lin, C. C., Seiler, C., George, R., Poncet-Montange, G., Biter, A. B., … Ladbury, J. E. (2018). Phosphorylation of threonine residues on Shc promotes ligand binding and mediates crosstalk between MAPK and Akt pathways in breast cancer cells. The International Journal of Biochemistry & Cell Biology, 94, 89–97. https://doi.org/10.1016/j.biocel.2017.11.014
Raies, A. B., & Bajic, V. B. (2017). In silico toxicology: comprehensive benchmarking of multi‐label classification methods applied to chemical toxicity data. WIREs Computational Molecular Science, 8(3). https://doi.org/10.1002/wcms.1352
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