2022
AlTassan, R., AlQudairy, H., Alromayan, R., Alfalah, A., AlHarbi, O. A., González-Álvarez, A. C., Arold, S. T., & Kaya, N. (2022). Clinical, Radiological, and Genetic Characterization of a Patient with a Novel Homoallelic Loss-of-Function Variant in DNM1. Genes, 13(12), 2252. https://doi.org/10.3390/genes13122252
Bajaffer, A., Mineta, K., Magistretti, P., & Gojobori, T. (2022). Lactate-mediated neural plasticity genes emerged during the evolution of memory systems. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-23784-8
Handle
Gallagher, A. J., Brownscombe, J. W., Alsudairy, N. A., Casagrande, A. B., Fu, C., Harding, L., Harris, S. D., Hammerschlag, N., Howe, W., Huertas, A. D., Kattan, S., Kough, A. S., Musgrove, A., Payne, N. L., Phillips, A., Shea, B. D., Shipley, O. N., Sumaila, U. R., Hossain, M. S., & Duarte, C. M. (2022). Tiger sharks support the characterization of the world’s largest seagrass ecosystem. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-33926-1
Handle
Hurtado-McCormick, V., Trevathan-Tackett, S. M., Bowen, J. L., Connolly, R. M., Duarte, C. M., & Macreadie, P. I. (2022). Pathways for Understanding Blue Carbon Microbiomes with Amplicon Sequencing. Microorganisms, 10(11), 2121. https://doi.org/10.3390/microorganisms10112121
Handle
He, Y., Yu, H., Huffman, A., Lin, A. Y., Natale, D. A., Beverley, J., Zheng, L., Perl, Y., Wang, Z., Liu, Y., Ong, E., Wang, Y., Huang, P., Tran, L., Du, J., Shah, Z., Shah, E., Desai, R., Huang, H., … Smith, B. (2022). A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. Journal of Biomedical Semantics, 13(1). https://doi.org/10.1186/s13326-022-00279-z
Handle
Xiong, L., Tian, K., Li, Y., Ning, W., Gao, X., & Zhang, Q. C. (2022). Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-33758-z
Handle
Alsanie, W. F., Abdelrahman, S., Alhomrani, M., Gaber, A., Alosimi, E. A., Habeeballah, H., Alkhatabi, H. A., Felimban, R. I., Hauser, C. A. E., Tayeb, H. H., Alamri, A. S., Alamri, A., Raafat, B. M., Alswat, K. A., Althobaiti, Y. S., & Asiri, Y. A. (2022). The Influence of Prenatal Exposure to Quetiapine Fumarate on the Development of Dopaminergic Neurons in the Ventral Midbrain of Mouse Embryos. International Journal of Molecular Sciences, 23(20), 12352. https://doi.org/10.3390/ijms232012352
Handle
Eckardt, N. A., Ainsworth, E. A., Bahuguna, R. N., Broadley, M. R., Busch, W., Carpita, N. C., Castrillo, G., Chory, J., DeHaan, L. R., Duarte, C. M., Henry, A., Jagadish, S. V. K., Langdale, J., Leakey, A. D. B., Liao, J. C., Lu, K.-J., McCann, M. C., McKay, J. K., Odeny, D. A., … Zhang, X. (2022). Climate change challenges, plant science solutions. The Plant Cell. https://doi.org/10.1093/plcell/koac303
Handle
Aldosary, M., Alsagob, M., AlQudairy, H., González-Álvarez, A. C., Arold, S. T., Dababo, M. A., Alharbi, O. A., Almass, R., AlBakheet, A., AlSarar, D., Qari, A., Al-Ansari, M. M., Oláhová, M., Al-Shahrani, S. A., AlSayed, M., Colak, D., Taylor, R. W., AlOwain, M., & Kaya, N. (2022). A Novel Homozygous Founder Variant of RTN4IP1 in Two Consanguineous Saudi Families. Cells, 11(19), 3154. https://doi.org/10.3390/cells11193154
Handle
Moshkov, M., Zielosko, B., & Tetteh, E. T. (2022). Selected Data Mining Tools for Data Analysis in Distributed Environment. Entropy, 24(10), 1401. https://doi.org/10.3390/e24101401
Maria, I. P., Griggs, S., Rashid, R. B., Paulsen, B. D., Surgailis, J., Thorley, K., Le, V. N., Harrison, G. T., Combe, C., Hallani, R., Giovannitti, A., Paterson, A. F., Inal, S., Rivnay, J., & McCulloch, I. (2022). Enhancing the Backbone Coplanarity of n-Type Copolymers for Higher Electron Mobility and Stability in Organic Electrochemical Transistors. Chemistry of Materials, 34(19), 8593–8602. https://doi.org/10.1021/acs.chemmater.2c01552
Handle
Pessarrodona, A., Assis, J., Filbee-Dexter, K., Burrows, M. T., Gattuso, J.-P., Duarte, C. M., Krause-Jensen, D., Moore, P. J., Smale, D. A., & Wernberg, T. (2022). Global seaweed productivity. Science Advances, 8(37). https://doi.org/10.1126/sciadv.abn2465
Han, W., Cheng, Y., Chen, J., Zhong, H., Hu, Z., Chen, S., Zong, L., Hong, L., Chan, T.-F., King, I., Gao, X., & Li, Y. (2022). Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. Briefings in Bioinformatics, 23(5). https://doi.org/10.1093/bib/bbac377
Li, H., Li, H., Zhou, J., & Gao, X. (2022). SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information. Bioinformatics. https://doi.org/10.1093/bioinformatics/btac605
Zheng, K., Zhao, H., Zhao, Q., Wang, B., Gao, X., & Wang, J. (2022). NASMDR: a framework for miRNA-drug resistance prediction using efficient neural architecture search and graph isomorphism networks. Briefings in Bioinformatics, 23(5). https://doi.org/10.1093/bib/bbac338
Rehman, Z. U., Momin, A. A., Aldehaiman, A., Irum, T., Grünberg, R., & Arold, S. T. (2022). The exceptionally efficient quorum quenching enzyme LrsL suppresses Pseudomonas aeruginosa biofilm production. Frontiers in Microbiology, 13. https://doi.org/10.3389/fmicb.2022.977673
Schultz, J., Parise, M. T. D., Parise, D., Medeiros, L. G., Sousa, T. J., Kato, R. B., Uetanabaro, A. P. T., Araújo, F., Ramos, R. T. J., de Castro Soares, S., Brenig, B., de Carvalho Azevedo, V. A., Góes-Neto, A., & Rosado, A. S. (2022). Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment. Microorganisms, 10(8), 1673. https://doi.org/10.3390/microorganisms10081673
Li, C., Zheng, H., Xiong, J., Huang, Y., Li, H., Jin, H., Ai, S., Wang, Y., Su, T., Sun, G., Xiao, X., Fu, T., Wang, Y., Gao, X., & Liang, P. (2022). miR-596-3p suppresses brain metastasis of non-small cell lung cancer by modulating YAP1 and IL-8. Cell Death & Disease, 13(8). https://doi.org/10.1038/s41419-022-05062-7
Handle
Momin, A. A., Mendes, T., Barthe, P., Faure, C., Hong, S., Yu, P., Kadaré, G., Jaremko, M., Girault, J.-A., Jaremko, Ł., & Arold, S. T. (2022). PYK2 senses calcium through a disordered dimerization and calmodulin-binding element. Communications Biology, 5(1). https://doi.org/10.1038/s42003-022-03760-8
Cui, H., Yi, H., Bao, H., Tan, Y., Tian, C., Shi, X., Gan, D., Zhang, B., Liang, W., Chen, R., Zhu, Q., Fang, L., Gao, X., Huang, H., Tian, R., Sperling, S. R., Hu, Y., & Chen, W. (2022). The SWI/SNF chromatin remodeling factor DPF3 regulates metastasis of ccRCC by modulating TGF-β signaling. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32472-0
Handle
Alghamdi, S. M., Schofield, P. N., & Hoehndorf, R. (2022). Contribution of model organism phenotypes to the computational identification of human disease genes. Disease Models & Mechanisms, 15(7). https://doi.org/10.1242/dmm.049441
Luo, X., Wang, X., Yao, Y., Gao, X., & Zhang, L. (2022). Unveiling the “Template-Dependent” Inhibition on the Viral Transcription of SARS-CoV-2. The Journal of Physical Chemistry Letters, 7197–7205. https://doi.org/10.1021/acs.jpclett.2c01314
Handle
Luo, X., Wang, X., Yao, Y., Gao, X., & Zhang, L. (2022). Unveiling the “Template-Dependent” Inhibition on the Viral Transcription of SARS-CoV-2. The Journal of Physical Chemistry Letters, 13(31), 7197–7205. https://doi.org/10.1021/acs.jpclett.2c01314
Santos Correa, S., Schultz, J., Lauersen, K. J., & Soares Rosado, A. (2022). Natural carbon fixation and advances in synthetic engineering for redesigning and creating new fixation pathways. Journal of Advanced Research. https://doi.org/10.1016/j.jare.2022.07.011
Arab, W. T., Susapto, H. H., Alhattab, D., & Hauser, C. A. E. (2022). Peptide nanogels as a scaffold for fabricating dermal grafts and 3D vascularized skin models. Journal of Tissue Engineering, 13, 204173142211118. https://doi.org/10.1177/20417314221111868
Handle
Koklu, A., Wustoni, S., Guo, K., Silva, R., Salvigni, L., Hama, A., Diaz‐Galicia, E., Moser, M., Marks, A., McCulloch, I., Grünberg, R., Arold, S. T., & Inal, S. (2022). Convection Driven Ultrarapid Protein Detection via Nanobody‐Functionalized Organic Electrochemical Transistors. Advanced Materials, 2202972. Portico. https://doi.org/10.1002/adma.202202972
Handle
Bajic, V. P., Salhi, A., Lakota, K., Radovanovic, A., Razali, R., Zivkovic, L., Spremo-Potparevic, B., Uludag, M., Tifratene, F., Motwalli, O., Marchand, B., Bajic, V. B., Gojobori, T., Isenovic, E. R., & Essack, M. (2022). DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases. PLOS ONE, 17(7), e0271737. https://doi.org/10.1371/journal.pone.0271737
Handle
Albaradei, S., Albaradei, A., Alsaedi, A., Uludag, M., Thafar, M. A., Gojobori, T., Essack, M., & Gao, X. (2022). MetastaSite: Predicting metastasis to different sites using deep learning with gene expression data. Frontiers in Molecular Biosciences, 9. https://doi.org/10.3389/fmolb.2022.913602
Handle
Alsanie, W. F., Abdelrahman, S., Alhomrani, M., Gaber, A., Habeeballah, H., Alkhatabi, H. A., Felimban, R. I., Hauser, C. A. E., Tayeb, H. H., Alamri, A. S., Raafat, B. M., Anwar, S., Alswat, K. A., Althobaiti, Y. S., & Asiri, Y. A. (2022). Prenatal Exposure to Gabapentin Alters the Development of Ventral Midbrain Dopaminergic Neurons. Frontiers in Pharmacology, 13. https://doi.org/10.3389/fphar.2022.923113
Handle
Peixoto, R. S., Voolstra, C. R., Sweet, M., Duarte, C. M., Carvalho, S., Villela, H., Lunshof, J. E., Gram, L., Woodhams, D. C., Walter, J., Roik, A., Hentschel, U., Thurber, R. V., Daisley, B., Ushijima, B., Daffonchio, D., Costa, R., Keller-Costa, T., Bowman, J. S., … Berg, G. (2022). Harnessing the microbiome to prevent global biodiversity loss. Nature Microbiology. https://doi.org/10.1038/s41564-022-01173-1
Handle
Abdelrahman, S., Alsanie, W. F., Khan, Z. N., Albalawi, H. I., Felimban, R. I., Moretti, M., Steiner, N., Chaudhary, A. G., & Hauser, C. A. E. (2022). A Parkinson’s disease model composed of 3D bioprinted dopaminergic neurons within a biomimetic peptide scaffold. Biofabrication, 14(4), 044103. https://doi.org/10.1088/1758-5090/ac7eec
Handle
Wesselmann, M., Geraldi, N. R., Marbà, N., Hendriks, I. E., Díaz-Rúa, R., & Duarte, C. M. (2022). eDNA Reveals the Associated Metazoan Diversity of Mediterranean Seagrass Sediments. Diversity, 14(7), 549. https://doi.org/10.3390/d14070549
Blanco-Sacristán, J., Johansen, K., Duarte, C. M., Daffonchio, D., Hoteit, I., & McCabe, M. F. (2022). Mangrove distribution and afforestation potential in the Red Sea. Science of The Total Environment, 843, 157098. https://doi.org/10.1016/j.scitotenv.2022.157098
Blanco-Sacristán, J., Johansen, K., Duarte, C. M., Daffonchio, D., Hoteit, I., & McCabe, M. F. (2022). Mangrove distribution and afforestation potential in the Red Sea. Science of The Total Environment, 843, 157098. https://doi.org/10.1016/j.scitotenv.2022.157098
Handle
Laref, S., Wang, B., Inal, S., Al-Ghamdi, S., Gao, X., & Gojobori, T. (2022). A Peculiar Binding Characterization of DNA (RNA) Nucleobases at MoOS-Based Janus Biosensor: Dissimilar Facets Role on Selectivity and Sensitivity. Biosensors, 12(7), 442. https://doi.org/10.3390/bios12070442
Handle
Koklu, A., Guo, K., Wustoni, S., Grunberg, R., Arold, S., & Inal, S. (2022). Pathogen and Protein Detection using Organic Electronics. 2022 6th IEEE Electron Devices Technology & Manufacturing Conference (EDTM). https://doi.org/10.1109/edtm53872.2022.9798008
Handle
Huntington, B., Zhao, L., Bron, P., Shahul Hameed, U. F., Arold, S. T., & Qureshi, B. M. (2022). Thicker Ice Improves the Integrity and Angular Distribution of CDC48A Hexamers on Cryo-EM Grids. Frontiers in Molecular Biosciences, 9. https://doi.org/10.3389/fmolb.2022.890390
Handle
Khan, A., Bruno, L. P., Alomar, F., Umair, M., Pinto, A. M., Khan, A. A., Khan, A., Saima, Fabbiani, A., Zguro, K., Furini, S., Mencarelli, M. A., Renieri, A., Resciniti, S., Peña-Guerra, K. A., Guzmán-Vega, F. J., Arold, S. T., Ariani, F., & Khan, S. N. (2022). SPTBN5, Encoding the βV-Spectrin Protein, Leads to a Syndrome of Intellectual Disability, Developmental Delay, and Seizures. Frontiers in Molecular Neuroscience, 15. https://doi.org/10.3389/fnmol.2022.877258
Zhang, J., Vancea, A. I., & Arold, S. T. (2022). Targeting plant UBX proteins: AI-enhanced lessons from distant cousins. Trends in Plant Science. https://doi.org/10.1016/j.tplants.2022.05.012
Handle
Moshkov, M. (2022). Decision trees for regular factorial languages. Array, 15, 100203. https://doi.org/10.1016/j.array.2022.100203
Alshehri, S., Karan, R., Ghalayini, S., Kahin, K., Khan, Z., Renn, D., Mathew, S., Rueping, M., & Hauser, C. A. E. (2022). Air-loaded Gas Vesicle Nanoparticles Promote Cell Growth in Three-dimensional Bioprinted Tissue Constructs. International Journal of Bioprinting, 8(3). https://doi.org/10.18063/ijb.v8i3.489
Handle
Peng, X., Wang, X., Guo, Y., Ge, Z., Li, F., Gao, X., & Song, J. (2022). RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. Briefings in Bioinformatics, 23(4). https://doi.org/10.1093/bib/bbac215
Fusi, M., Booth, J. M., Marasco, R., Merlino, G., Garcias-Bonet, N., Barozzi, A., Garuglieri, E., Mbobo, T., Diele, K., Duarte, C. M., & Daffonchio, D. (2022). Bioturbation Intensity Modifies the Sediment Microbiome and Biochemistry and Supports Plant Growth in an Arid Mangrove System. Microbiology Spectrum, 10(3). https://doi.org/10.1128/spectrum.01117-22
Handle
Fusi, M., Booth, J. M., Marasco, R., Merlino, G., Garcias-Bonet, N., Barozzi, A., Garuglieri, E., Mbobo, T., Diele, K., Duarte, C. M., & Daffonchio, D. (2022). Bioturbation Intensity Modifies the Sediment Microbiome and Biochemistry and Supports Plant Growth in an Arid Mangrove System. Microbiology Spectrum, 10(3). https://doi.org/10.1128/spectrum.01117-22
Alma’abadi, A., Behzad, H., Alarawi, M., Conchouso, D., Saito, Y., Hosokawa, M., Nishikawa, Y., Kogawa, M., Takeyama, H., Mineta, K., & Gojobori, T. (2022). Identification of lipolytic enzymes using high-throughput single-cell screening and sorting of a metagenomic library. New Biotechnology, 70, 102–108. https://doi.org/10.1016/j.nbt.2022.05.006
Handle
Marbà, N., Jordà, G., Bennett, S., & Duarte, C. M. (2022). Seagrass Thermal Limits and Vulnerability to Future Warming. Frontiers in Marine Science, 9. https://doi.org/10.3389/fmars.2022.860826
Handle
Guan, R., Pang, H., Liang, Y., Shao, Z., Gao, X., Xu, D., & Feng, X. (2022). Discovering trends and hotspots of biosafety and biosecurity research via machine learning. Briefings in Bioinformatics, 23(5). https://doi.org/10.1093/bib/bbac194
Handle
Martin, C., Young, C. A., Valluzzi, L., & Duarte, C. M. (2022). Ocean sediments as the global sink for marine micro‐ and mesoplastics. Limnology and Oceanography Letters, 7(3), 235–243. Portico. https://doi.org/10.1002/lol2.10257
Macreadie, P. I., Robertson, A. I., Spinks, B., Adams, M. P., Atchison, J. M., Bell-James, J., Bryan, B. A., Chu, L., Filbee-Dexter, K., Drake, L., Duarte, C. M., Friess, D. A., Gonzalez, F., Grafton, R. Q., Helmstedt, K. J., Kaebernick, M., Kelleway, J., Kendrick, G. A., Kennedy, H., … Rogers, K. (2022). Operationalizing marketable blue carbon. One Earth, 5(5), 485–492. https://doi.org/10.1016/j.oneear.2022.04.005
Stanimirovic, J., Radovanovic, J., Banjac, K., Obradovic, M., Essack, M., Zafirovic, S., Gluvic, Z., Gojobori, T., & Isenovic, E. R. (2022). Role of C-Reactive Protein in Diabetic Inflammation. Mediators of Inflammation, 2022, 1–15. https://doi.org/10.1155/2022/3706508
Handle
Aboheimed, G. I., AlRasheed, M. M., Almudimeegh, S., Peña-Guerra, K. A., Cardona-Londoño, K. J., Salih, M. A., Seidahmed, M. Z., Al-Mohanna, F., Colak, D., Harvey, R. J., Harvey, K., Arold, S. T., Kaya, N., & Ruiz, A. J. (2022). Clinical, genetic, and functional characterization of the glycine receptor β-subunit A455P variant in a family affected by hyperekplexia syndrome. Journal of Biological Chemistry, 298(7), 102018. https://doi.org/10.1016/j.jbc.2022.102018
Handle
Herrera, M., Tubío, A., Pita, P., Vázquez, E., Olabarria, C., Duarte, C. M., & Villasante, S. (2022). Trade-Offs and Synergies Between Seagrass Ecosystems and Fishing Activities: A Global Literature Review. Frontiers in Marine Science, 9. https://doi.org/10.3389/fmars.2022.781713
Handle
Duarte, C. M., Ketcheson, D. I., Eguíluz, V. M., Agustí, S., Fernández-Gracia, J., Jamil, T., Laiolo, E., Gojobori, T., & Alam, I. (2022). Rapid evolution of SARS-CoV-2 challenges human defenses. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-10097-z
Bank, M. S., Duarte, C. M., & Sonne, C. (2022). Intergovernmental Panel on Blue Foods in Support of Sustainable Development and Nutritional Security. Environmental Science & Technology, 56(9), 5302–5305. https://doi.org/10.1021/acs.est.2c00119
Handle
Naser, R., Momin, A. A., Ali, A. J., Merzaban, J., & Arold, S. T. (2022). The purified recombinant FAT domain of the Focal Adhesion Kinase does not bind directly to recombinant Talin or MBD2 in vitro. https://doi.org/10.1101/2022.04.06.487260
Behzad, H., Ohyanagi, H., Alharbi, B., Ibarra, M., Alarawi, M., Saito, Y., Duarte, C. M., Bajic, V., Mineta, K., & Gojobori, T. (2022). A cautionary signal from the Red Sea on the impact of increased dust activity on marine microbiota. BMC Genomics, 23(1). https://doi.org/10.1186/s12864-022-08485-w
Alshahrani, M., Almansour, A., Alkhaldi, A., Thafar, M. A., Uludag, M., Essack, M., & Hoehndorf, R. (2022). Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications. PeerJ, 10, e13061. Portico. https://doi.org/10.7717/peerj.13061
Handle
Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sánchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., & Fernàndez-Guerra, A. (2022). Unifying the known and unknown microbial coding sequence space. ELife, 11. CLOCKSS. https://doi.org/10.7554/elife.67667
Sierra, A. M. R., Arold, S. T., & Grünberg, R. (2022). Efficient multi-gene expression in cell-free droplet microreactors. PLOS ONE, 17(3), e0260420. https://doi.org/10.1371/journal.pone.0260420
Zorzi, G., Giustolisi, B., Aristodemo, V., Cecchetto, C., Hauser, C., Quer, J., Sánchez Amat, J., & Donati, C. (2022). On the Reliability of the Notion of Native Signer and Its Risks. Frontiers in Psychology, 13. https://doi.org/10.3389/fpsyg.2022.716554
Alsanie, W. F., Alhomrani, M., Gaber, A., Habeeballah, H., Alkhatabi, H. A., Felimban, R. I., Abdelrahman, S., Hauser, C. A. E., Chaudhary, A. G., Alamri, A. S., Raafat, B. M., Alamri, A., Anwar, S., Alswat, K. A., Althobaiti, Y. S., & Asiri, Y. A. (2022). The Effects of Prenatal Exposure to Pregabalin on the Development of Ventral Midbrain Dopaminergic Neurons. Cells, 11(5), 852. https://doi.org/10.3390/cells11050852
Handle
Alsanie, W. F., Alhomrani, M., Gaber, A., Habeeballah, H., Alkhatabi, H. A., Felimban, R. I., Abdelrahman, S., Hauser, C. A. E., Chaudhary, A. G., Alamri, A. S., Raafat, B. M., Alamri, A., Anwar, S., Alswat, K. A., Althobaiti, Y. S., & Asiri, Y. A. (2022). The Effects of Prenatal Exposure to Pregabalin on the Development of Ventral Midbrain Dopaminergic Neurons. Cells, 11(5), 852. https://doi.org/10.3390/cells11050852
Handle
Savva, A., Hama, A., Herrera-López, G., Gasparini, N., Migliaccio, L., Kawan, M., Steiner, N., McCulloch, I., Baran, D., Fiumelli, H., Magistretti, P., Głowacki, E. D., & Inal, S. (2022). Photo-Electrochemical Stimulation of Neurons with Organic Donor-Acceptor Heterojunctions. https://doi.org/10.1101/2022.02.17.480608
Handle
Jankovic, B., & Gojobori, T. (2022). From shallow to deep: some lessons learned from application of machine learning for recognition of functional genomic elements in human genome. Human Genomics, 16(1). https://doi.org/10.1186/s40246-022-00376-1
Handle
Yu, B., Zhang, Y., Wang, X., Gao, H., Sun, J., & Gao, X. (2022). Identification of DNA modification sites based on elastic net and bidirectional gated recurrent unit with convolutional neural network. Biomedical Signal Processing and Control, 75, 103566. https://doi.org/10.1016/j.bspc.2022.103566
Handle
Klein, S. G., Alsolami, S. M., Arossa, S., Ramos-Mandujano, G., Parry, A. J., Steckbauer, A., Duarte, C. M., & Li, M. (2022). In situ monitoring reveals cellular environmental instabilities in human pluripotent stem cell culture. Communications Biology, 5(1). https://doi.org/10.1038/s42003-022-03065-w
Inal, S. (2022). Fast and sensitive electromechanical sensing. Nature Biomedical Engineering, 6(3), 223–224. https://doi.org/10.1038/s41551-021-00841-7
Handle
Slater, L. T., Russell, S., Makepeace, S., Carberry, A., Karwath, A., Williams, J. A., Fanning, H., Ball, S., Hoehndorf, R., & Gkoutos, G. V. (2022). Evaluating semantic similarity methods for comparison of text-derived phenotype profiles. BMC Medical Informatics and Decision Making, 22(1). https://doi.org/10.1186/s12911-022-01770-4
Handle
Pfeifer, L., van Erven, G., Sinclair, E. A., Duarte, C. M., Kabel, M. A., & Classen, B. (2022). Profiling the cell walls of seagrasses from A (Amphibolis) to Z (Zostera). BMC Plant Biology, 22(1). https://doi.org/10.1186/s12870-022-03447-6
Handle
Pantoja Angles, A., Valle-Pérez, A. U., Hauser, C., & Mahfouz, M. M. (2022). Microbial Biocontainment Systems for Clinical, Agricultural, and Industrial Applications. Frontiers in Bioengineering and Biotechnology, 10. https://doi.org/10.3389/fbioe.2022.830200
Handle
Chen, S., Wang, J., Gao, X., & Li, Y. (2022). HiC-LDNet: A general and robust deep learning framework for accurate chromatin loop detection in genome-wide contact maps. https://doi.org/10.1101/2022.01.30.478367
Chen, S., Wang, J., Gao, X., & Li, Y. (2022). HiC-LDNet: A general and robust deep learning framework for accurate chromatin loop detection in genome-wide contact maps. https://doi.org/10.1101/2022.01.30.478367
Ouyang, X., Duarte, C. M., Cheung, S.-G., Tam, N. F.-Y., Cannicci, S., Martin, C., Lo, H. S., & Lee, S. Y. (2022). Fate and Effects of Macro- and Microplastics in Coastal Wetlands. Environmental Science & Technology, 56(4), 2386–2397. https://doi.org/10.1021/acs.est.1c06732
Gazulla, C. R., Auladell, A., Ruiz‐González, C., Junger, P. C., Royo‐Llonch, M., Duarte, C. M., Gasol, J. M., Sánchez, O., & Ferrera, I. (2022). Global diversity and distribution of aerobic anoxygenic phototrophs in the tropical and subtropical oceans. Environmental Microbiology, 24(5), 2222–2238. Portico. https://doi.org/10.1111/1462-2920.15835
Chandra, S., Gourisaria, M. K., Gm, H., Konar, D., Gao, X., Wang, T., & Xu, M. (2022). Prolificacy Assessment of Spermatozoan via State-of-the-Art Deep Learning Frameworks. IEEE Access, 10, 13715–13727. https://doi.org/10.1109/access.2022.3146334
Handle
Díaz-Galicia, E., Grünberg, R., & Arold, S. T. (2022). How to Find the Right RNA-Sensing CRISPR-Cas System for an In Vitro Application. Biosensors, 12(2), 53. https://doi.org/10.3390/bios12020053
Kulmanov, M., & Hoehndorf, R. (2022). DeepGOZero: Improving protein function prediction from sequence and zero-shot learning based on ontology axioms. https://doi.org/10.1101/2022.01.14.476325
Handle
Moshkov, M. (2022). On the Depth of Decision Trees with Hypotheses. Entropy, 24(1), 116. https://doi.org/10.3390/e24010116
Handle
Abbas, M., Susapto, H. H., & Hauser, C. A. E. (2022). Synthesis and Organization of Gold-Peptide Nanoparticles for Catalytic Activities. ACS Omega, 7(2), 2082–2090. https://doi.org/10.1021/acsomega.1c05546
Handle
Peng, X., Tang, Z., Kulmanov, M., Niu, K., & Hoehndorf, R. (2022). Description Logic EL++ Embeddings with Intersectional Closure (Version 1). arXiv. https://doi.org/10.48550/ARXIV.2202.14018
Moshkov, M. (2022). Exact learning and test theory (Version 1). arXiv. https://doi.org/10.48550/ARXIV.2201.04506
Tang, Z., Pei, S., Zhang, Z., Zhu, Y., Zhuang, F., Hoehndorf, R., & Zhang, X. (2022). Positive-Unlabeled Learning with Adversarial Data Augmentation for Knowledge Graph Completion (Version 3). arXiv. https://doi.org/10.48550/ARXIV.2205.00904
Moser, M., Wang, Y., Hidalgo, T. C., Liao, H., Yu, Y., Chen, J., Duan, J., Moruzzi, F., Griggs, S., Marks, A., Gasparini, N., Wadsworth, A., Inal, S., McCulloch, I., & Yue, W. (2022). Propylene and butylene glycol: new alternatives to ethylene glycol in conjugated polymers for bioelectronic applications. Materials Horizons, 9(3), 973–980. https://doi.org/10.1039/d1mh01889b
Handle
2021
Aldhalaan, H., AlBakheet, A., AlRuways, S., AlMutairi, N., AlNakiyah, M., AlGhofaili, R., Cardona-Londoño, K. J., Alahmadi, K. O., AlQudairy, H., AlRasheed, M. M., Colak, D., Arold, S. T., & Kaya, N. (2021). A Novel GEMIN4 Variant in a Consanguineous Family Leads to Neurodevelopmental Impairment with Severe Microcephaly, Spastic Quadriplegia, Epilepsy, and Cataracts. Genes, 13(1), 92. https://doi.org/10.3390/genes13010092
Handle
Alsaif, H. S., Alshehri, A., Sulaiman, R. A., Al‐Hindi, H., Guzmán‐Vega, F. J., Arold, S. T., & Alkuraya, F. S. (2021). MYH1 is a candidate gene for recurrent rhabdomyolysis in humans. American Journal of Medical Genetics Part A. https://doi.org/10.1002/ajmg.a.62188
Handle
Wei, J., Chen, S., Zong, L., Gao, X., & Li, Y. (2021). Protein–RNA interaction prediction with deep learning: structure matters. Briefings in Bioinformatics, 23(1). https://doi.org/10.1093/bib/bbab540
Handle
Conchouso, D., Al-Ma’abadi, A., Behzad, H., Alarawi, M., Hosokawa, M., Nishikawa, Y., Takeyama, H., Mineta, K., & Gojobori, T. (2021). Integration of Droplet Microfluidic Tools for Single-cell Functional Metagenomics: An Engineering Head Start. Genomics, Proteomics & Bioinformatics, 19(3), 504–518. https://doi.org/10.1016/j.gpb.2021.03.010
Handle
Farhat, N., Kim, L., Mineta, K., Alarawi, M., Gojobori, T., Saikaly, P., & Vrouwenvelder, J. (2022). Seawater desalination based drinking water: Microbial characterization during distribution with and without residual chlorine. Water Research, 210, 117975. https://doi.org/10.1016/j.watres.2021.117975
Handle
He, W., Jiang, Y., Jin, J., Li, Z., Zhao, J., Manavalan, B., Su, R., Gao, X., & Wei, L. (2021). Accelerating bioactive peptide discovery via mutual information-based meta-learning. Briefings in Bioinformatics, 23(1). https://doi.org/10.1093/bib/bbab499
Handle
Stoikov, D., Ivanov, A., Shurpik, D., Stoikov, I., & Evtugyn, G. (2021). Flow-Through Electrochemical Biosensor with a Replaceable Enzyme Reactor and Screen-Printed Electrode for the Determination of Uric Acid and Tyrosine. Analytical Letters, 1–15. https://doi.org/10.1080/00032719.2021.2000621
Fan, M., Cui, Y., You, C., Liu, L., Gu, Y., Peng, W., Bai, Q., Gao, X., & Li, L. (2022). Radiogenomic Signatures of Oncotype DX Recurrence Score Enable Prediction of Survival in Estrogen Receptor–Positive Breast Cancer: A Multicohort Study. Radiology, 302(3), 516–524. https://doi.org/10.1148/radiol.2021210738
Handle
Fan, M., Cui, Y., You, C., Liu, L., Gu, Y., Peng, W., Bai, Q., Gao, X., & Li, L. (2022). Radiogenomic Signatures of Oncotype DX Recurrence Score Enable Prediction of Survival in Estrogen Receptor–Positive Breast Cancer: A Multicohort Study. Radiology, 302(3), 516–524. https://doi.org/10.1148/radiol.2021210738
Handle
Zarban, R. A., Hameed, U. F. S., Jamil, M., Ota, T., Wang, J. Y., Arold, S. T., Asami, T., & Al-Babili, S. (2021). Rational design of Striga hermonthica-specific seed germination inhibitors. Plant Physiology, 188(2), 1369–1384. https://doi.org/10.1093/plphys/kiab547
Handle
Vogeley, C., Sondermann, N. C., Woeste, S., Momin, A. A., Gilardino, V., Hartung, F., Heinen, M., Maaß, S. K., Mescher, M., Pollet, M., Rolfes, K. M., Vogel, C. F. A., Rossi, A., Lang, D., Arold, S. T., Nakamura, M., & Haarmann-Stemmann, T. (2022). Unraveling the differential impact of PAHs and dioxin-like compounds on AKR1C3 reveals the EGFR extracellular domain as a critical determinant of the AHR response. Environment International, 158, 106989. https://doi.org/10.1016/j.envint.2021.106989
Handle
Hammerman, N. M., Roff, G., Rodriguez-Ramirez, A., Leonard, N., Staples, T. L., Eyal, G., Rossbach, S., Havlik, M. N., Saderne, V., Zhao, J., Duarte, C. M., & Pandolfi, J. M. (2022). Reef accumulation is decoupled from recent degradation in the central and southern Red Sea. Science of The Total Environment, 809, 151176. https://doi.org/10.1016/j.scitotenv.2021.151176
Huang, N., Nie, F., Ni, P., Gao, X., Luo, F., & Wang, J. (2021). BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer. Briefings in Bioinformatics, 23(1). https://doi.org/10.1093/bib/bbab405
Handle
Wu, X., Stephen, M., Hidalgo, T. C., Salim, T., Surgailis, J., Surendran, A., Su, X., Li, T., Inal, S., & Leong, W. L. (2021). Ionic‐Liquid Induced Morphology Tuning of PEDOT:PSS for High‐Performance Organic Electrochemical Transistors. Advanced Functional Materials, 32(1), 2108510. Portico. https://doi.org/10.1002/adfm.202108510
Handle
Yamamoto, N., Nishida, N., Yamamoto, R., Gojobori, T., Shimotohno, K., Mizokami, M., & Ariumi, Y. (2021). Angiotensin–Converting Enzyme (ACE) 1 Gene Polymorphism and Phenotypic Expression of COVID-19 Symptoms. Genes, 12(10), 1572. https://doi.org/10.3390/genes12101572
Handle
Yamamoto, N., Nishida, N., Yamamoto, R., Gojobori, T., Shimotohno, K., Mizokami, M., & Ariumi, Y. (2021). Angiotensin–Converting Enzyme (ACE) 1 Gene Polymorphism and Phenotypic Expression of COVID-19 Symptoms. Genes, 12(10), 1572. https://doi.org/10.3390/genes12101572
Handle
Fatani, S., Saito, Y., Alarawi, M., Gojobori, T., & Mineta, K. (2021). Genome sequencing and identification of cellulase genes in Bacillus paralicheniformis strains from the Red Sea. BMC Microbiology, 21(1). https://doi.org/10.1186/s12866-021-02316-w
Handle
Thafar, M. A., Olayan, R. S., Albaradei, S., Bajic, V. B., Gojobori, T., Essack, M., & Gao, X. (2021). DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learning. Journal of Cheminformatics, 13(1). https://doi.org/10.1186/s13321-021-00552-w
Handle
Jia, K.-P., Mi, J., Ali, S., Ohyanagi, H., Moreno, J. C., Ablazov, A., Balakrishna, A., Berqdar, L., Fiore, A., Diretto, G., Martínez, C., de Lera, A. R., Gojobori, T., & Al-Babili, S. (2022). An alternative, zeaxanthin epoxidase-independent abscisic acid biosynthetic pathway in plants. Molecular Plant, 15(1), 151–166. https://doi.org/10.1016/j.molp.2021.09.008
Handle
Azad, M., Chikalov, I., Hussain, S., & Moshkov, M. (2021). Minimizing Depth of Decision Trees with Hypotheses. Lecture Notes in Computer Science, 123–133. https://doi.org/10.1007/978-3-030-87334-9_11
Handle
Calich, H. J., Rodríguez, J. P., Eguíluz, V. M., Hammerschlag, N., Pattiaratchi, C., Duarte, C. M., & Sequeira, A. M. M. (2021). Comprehensive analytical approaches reveal species‐specific search strategies in sympatric apex predatory sharks. Ecography, 44(10), 1544–1556. https://doi.org/10.1111/ecog.05953
Handle
Li, X., Lau, A. Y. T., Ng, A. S. N., Aldehaiman, A., Zhou, Y., Ng, P. K. S., … Cheung, L. W. T. (2021). Cancer-associated mutations in the p85α N-terminal SH2 domain activate a spectrum of receptor tyrosine kinases. Proceedings of the National Academy of Sciences, 118(37), e2101751118. https://doi.org/10.1073/pnas.2101751118
Handle
Hopkins, L. W., Geraldi, N. R., Pope, E. C., Holton, M. D., Lurgi, M., Duarte, C. M., & Wilson, R. P. (2021). Testing angular velocity as a new metric for metabolic demands of slow-moving marine fauna: a case study with Giant spider conchs Lambis truncata. Animal Biotelemetry, 9(1). https://doi.org/10.1186/s40317-021-00255-x
Handle
Albaradei, S., Thafar, M., Alsaedi, A., Van Neste, C., Gojobori, T., Essack, M., & Gao, X. (2021). Machine Learning and Deep Learning Methods that use Omics Data for Metastasis Prediction. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2021.09.001
Handle
Ziegler, M., Anton, A., Klein, S. G., Rädecker, N., Geraldi, N. R., Schmidt‐Roach, S., Saderne, V., Mumby, P. J., Cziesielski, M. J., Martin, C., Frölicher, T. L., Pandolfi, J. M., Suggett, D. J., Aranda, M., Duarte, C. M., & Voolstra, C. R. (2021). Integrating environmental variability to broaden the research on coral responses to future ocean conditions. Global Change Biology, 27(21), 5532–5546. Portico. https://doi.org/10.1111/gcb.15840
Ziegler, M., Anton, A., Klein, S. G., Rädecker, N., Geraldi, N. R., Schmidt‐Roach, S., Saderne, V., Mumby, P. J., Cziesielski, M. J., Martin, C., Frölicher, T. L., Pandolfi, J. M., Suggett, D. J., Aranda, M., Duarte, C. M., & Voolstra, C. R. (2021). Integrating environmental variability to broaden the research on coral responses to future ocean conditions. Global Change Biology, 27(21), 5532–5546. Portico. https://doi.org/10.1111/gcb.15840
Handle
Ziegler, M., Anton, A., Klein, S. G., Rädecker, N., Geraldi, N. R., Schmidt‐Roach, S., … Voolstra, C. R. (2021). Integrating environmental variability to broaden the research on coral responses to future ocean conditions. Global Change Biology, 27(21), 5532–5546. https://doi.org/10.1111/gcb.15840
Handle
Albalawi, H. I., Khan, Z. N., Valle-Pérez, A. U., Kahin, K. M., Hountondji, M., Alwazani, H., … Hauser, C. A. E. (2021). Sustainable and Eco-Friendly Coral Restoration through 3D Printing and Fabrication. ACS Sustainable Chemistry & Engineering, 9(37), 12634–12645. https://doi.org/10.1021/acssuschemeng.1c04148
Handle
Klein, S. G., Geraldi, N. R., Anton, A., Schmidt‐Roach, S., Ziegler, M., Cziesielski, M. J., … Duarte, C. M. (2021). Projecting coral responses to intensifying marine heatwaves under ocean acidification. Global Change Biology. https://doi.org/10.1111/gcb.15818
Handle
Klein, S. G., Geraldi, N. R., Anton, A., Schmidt‐Roach, S., Ziegler, M., Cziesielski, M. J., Martin, C., Rädecker, N., Frölicher, T. L., Mumby, P. J., Pandolfi, J. M., Suggett, D. J., Voolstra, C. R., Aranda, M., & Duarte, Carlos. M. (2021). Projecting coral responses to intensifying marine heatwaves under ocean acidification. Global Change Biology, 28(5), 1753–1765. Portico. https://doi.org/10.1111/gcb.15818
Kobiyama, A., Rashid, J., Reza, M. S., Ikeda, Y., Yamada, Y., Kudo, T., … Watabe, S. (2021). Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-96641-9
Handle
Kafkas, Ş., Althubaiti, S., Gkoutos, G. V., Hoehndorf, R., & Schofield, P. N. (2021). Linking common human diseases to their phenotypes; development of a resource for human phenomics. Journal of Biomedical Semantics, 12(1). htttps://doi:10.1186/s13326-021-00249-x
Handle
Alalwan, A., Albalawi, F., & Laleg-Kirati, T. M. (2021). Tracking Model Predictive Control Paradigm for Underwater Optical Communication. IEEE Open Journal of the Communications Society, 1–1. https://doi.org/10.1109/ojcoms.2021.3104929
Handle
Klein, S. G., Alsolami, S. M., Steckbauer, A., Arossa, S., Parry, A. J., Ramos Mandujano, G., Alsayegh, K., Izpisua Belmonte, J. C., Li, M., & Duarte, C. M. (2021). A prevalent neglect of environmental control in mammalian cell culture calls for best practices. Nature Biomedical Engineering, 5(8), 787–792. https://doi.org/10.1038/s41551-021-00775-0
Klein, S. G., Alsolami, S. M., Steckbauer, A., Arossa, S., Parry, A. J., Ramos Mandujano, G., … Duarte, C. M. (2021). A prevalent neglect of environmental control in mammalian cell culture calls for best practices. Nature Biomedical Engineering, 5(8), 787–792. https://doi.org/10.1038/s41551-021-00775-0
Handle
Zhao, X., Remington, J. M., Schneebeli, S. T., Arold, S. T., & Li, J. (2021). Molecular Basis for Environment Sensing by a Nucleoid-Structuring Bacterial Protein Filament. The Journal of Physical Chemistry Letters, 12(32), 7878–7884. https://doi.org/10.1021/acs.jpclett.1c01710
Handle
Abouelhoda, M., Mohty, D., Alayary, I., Meyer, B. F., Arold, S. T., Fadel, B. M., & Monies, D. (2021). Established and candidate transthyretin amyloidosis variants identified in the Saudi population by data mining. Human Genomics, 15(1). https://doi.org/10.1186/s40246-021-00351-2
Handle
Queralt-Rosinach, N., Schofield, P., Hoehndorf, R., Weiland, C., Schultes, E. A., Bernabé, C. H., & Roos, M. (2021). The COVID-19 epidemiology and monitoring ontology. https://doi.org/10.37044/osf.io/n6tcz
Handle
Salsench, E. M., Maroofian, R., Deng, R., Lanko, K., Nikoncuk, A., Pérez, B., … Barakat, T. S. (2021). Expanding the mutational landscape and clinical phenotype of the YIF1B related brain disorder. Brain. https://doi.org/10.1093/brain/awab297
Handle
Albaradei, S., Napolitano, F., Thafar, M. A., Gojobori, T., Essack, M., & Gao, X. (2021). MetaCancer: A deep learning-based pan-cancer metastasis prediction model developed using multi-omics data. Computational and Structural Biotechnology Journal, 19, 4404–4411. https://doi.org/10.1016/j.csbj.2021.08.006
Handle
Abdelrahman, S., Alghrably, M., Campagna, M., Hauser, C. A. E., Jaremko, M., & Lachowicz, J. I. (2021). Metal Complex Formation and Anticancer Activity of Cu(I) and Cu(II) Complexes with Metformin. Molecules, 26(16), 4730. https://doi.org/10.3390/molecules26164730
Handle
Shimada, T., Meekan, M. G., Baldwin, R., Al-Suwailem, A. M., Clarke, C., Santillan, A. S., & Duarte, C. M. (2021). Distribution and temporal trends in the abundance of nesting sea turtles in the Red Sea. Biological Conservation, 261, 109235. https://doi.org/10.1016/j.biocon.2021.109235
Handle
Li, X., Sindihebura, T. T., Zhou, L., Duarte, C. M., Costa, D. P., Hindell, M. A., … Peng, C. (2021). A prediction and imputation method for marine animal movement data. PeerJ Computer Science, 7, e656. https://doi.org/10.7717/peerj-cs.656
Handle
Agulles, M., Jordà, G., Hoteit, I., Agustí, S., & Duarte, C. M. (2021). Assessment of Red Sea temperatures in CMIP5 models for present and future climate. PLOS ONE, 16(7), e0255505. https://doi.org/10.1371/journal.pone.0255505
Handle
Gallagher, A. J., Alsudairy, N. A., Shea, B. D., Payne, N. L., & Duarte, C. M. (2021). First Application of 360-Degree Camera Technology to Marine Predator Bio-Logging. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.707376
Handle
Britten, G. L., Duarte, C. M., & Worm, B. (2021). Recovery of assessed global fish stocks remains uncertain. Proceedings of the National Academy of Sciences, 118(31). https://doi.org/10.1073/pnas.2108532118
Handle
Britten, G. L., Duarte, C. M., & Worm, B. (2021). Recovery of assessed global fish stocks remains uncertain. Proceedings of the National Academy of Sciences, 118(31). https://doi.org/10.1073/pnas.2108532118
Handle
Britten, G. L., Duarte, C. M., & Worm, B. (2021). Recovery of assessed global fish stocks remains uncertain. Proceedings of the National Academy of Sciences, 118(31), e2108532118. https://doi.org/10.1073/pnas.2108532118
Handle
Arossa, S., Barozzi, A., Callegari, M., Klein, S. G., Parry, A. J., Hung, S.-H., … Duarte, C. M. (2021). The Internal Microenvironment of the Symbiotic Jellyfish Cassiopea sp. From the Red Sea. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.705915
Handle
Wang, Q., Duarte, C., Song, L., Christakos, G., Agusti, S., & Wu, J. (2021). Effects of Ecological Restoration Using Non-Native Mangrove Kandelia obovata to Replace Invasive Spartina alterniflora on Intertidal Macrobenthos Community in Maoyan Island (Zhejiang, China). Journal of Marine Science and Engineering, 9(8), 788. https://doi.org/10.3390/jmse9080788
Handle
Moshkov, M. (2021). Decision trees based on 1-consequences. Discrete Applied Mathematics, 302, 208–214. https://doi.org/10.1016/j.dam.2021.07.017
Handle
Alshukairi, A. N., El-Kafrawy, S. A., Dada, A., Yasir, M., Yamani, A. H., Saeedi, M. F., … Azhar, E. I. (2021). Re-infection with a different SARS-CoV-2 clade and prolonged viral shedding in a hematopoietic stem cell transplantation patient. International Journal of Infectious Diseases, 110, 267–271. https://doi.org/10.1016/j.ijid.2021.07.036
Handle
Rolandi, M., Noy, A., Inal, S., & Rivnay, J. (2021). Advances in bioelectronics: Materials, devices, and translational applications. APL Materials, 9(7), 070402. https://doi.org/10.1063/5.0060323
Handle
Deutschmann, I. M., Delage, E., Giner, C. R., Sebastián, M., Poulain, J., Arístegui, J., … Logares, R. (2021). Disentangling marine microbial networks across space. https://doi.org/10.1101/2021.07.12.451729
Handle
AlSaieedi, A., Salhi, A., Tifratene, F., Raies, A. B., Hungler, A., Uludag, M., … Essack, M. (2021). DES-Tcell is a knowledgebase for exploring immunology-related literature. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-93809-1
Handle
Queiroz, N., Humphries, N. E., Couto, A., Vedor, M., da Costa, I., Sequeira, A. M. M., … Abercrombie, D. L. (2021). Reply to: Shark mortality cannot be assessed by fishery overlap alone. Nature, 595(7866), E8–E16. https://doi.org/10.1038/s41586-021-03397-3
Handle
Queiroz, N., Humphries, N. E., Couto, A., Vedor, M., da Costa, I., Sequeira, A. M. M., … Abercrombie, D. L. (2021). Reply to: Caution over the use of ecological big data for conservation. Nature, 595(7866), E20–E28. https://doi.org/10.1038/s41586-021-03464-9
Handle
Queiroz, N., Humphries, N. E., Couto, A., Vedor, M., da Costa, I., Sequeira, A. M. M., … Abercrombie, D. L. (2021). Reply to: Caution over the use of ecological big data for conservation. Nature, 595(7866), E20–E28. https://doi.org/10.1038/s41586-021-03464-9
Handle
L Ghaffour, TML Kirati, (2021). Reference Tracking AND Observer Design for Space-Fractional Partial Differential Equation Modeling Gas Pressures in Fractured Media. arXiv.2107.02042
Handle
DOI
2107.02042Liao, X., Li, M., Hu, K., Wu, F.-X., Gao, X., & Wang, J. (2021). A sensitive repeat identification framework based on short and long reads. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab563
Handle
Gunner, R. M., Holton, M. D., Scantlebury, M. D., van Schalkwyk, O. L., English, H. M., Williams, H. J., … Wilson, R. P. (2021). Dead-reckoning animal movements in R: a reappraisal using Gundog.Tracks. Animal Biotelemetry, 9(1). https://doi.org/10.1186/s40317-021-00245-z
Handle
Gunner, R. M., Holton, M. D., Scantlebury, M. D., van Schalkwyk, O. L., English, H. M., Williams, H. J., … Wilson, R. P. (2021). Dead-reckoning animal movements in R: a reappraisal using Gundog.Tracks. Animal Biotelemetry, 9(1). https://doi.org/10.1186/s40317-021-00245-z
Handle
Azad, M., Chikalov, I., Hussain, S., & Moshkov, M. (2021). Optimization of Decision Trees with Hypotheses for Knowledge Representation. Electronics, 10(13), 1580. https://doi.org/10.3390/electronics10131580
Handle
Gu, J., Jin, R., Chen, G., Ye, Z., Li, Q., Wang, H., … Wu, J. (2021). Areal Extent, Species Composition, and Spatial Distribution of Coastal Saltmarshes in China. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 14, 7085–7094. https://doi.org/10.1109/jstars.2021.3093673
Handle
Yu, G., Huang, Q., Zhang, X., Guo, M., & Wang, J. (2021). Tissue Specificity based Isoform Function Prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1–1. https://doi.org/10.1109/tcbb.2021.3093167
Handle
Bajaffer, A., Mineta, K., & Gojobori, T. (2021). Evolution of memory system‐related genes. FEBS Open Bio. https://doi.org/10.1002/2211-5463.13224
Handle
Nayak, P. D., Ohayon, D., Wustoni, S., & Inal, S. (2021). Tailoring Electropolymerized Poly(3,4‐ethylenedioxythiophene) Films for Oxygen Reduction Reaction. Advanced Materials Technologies, 7(2), 2100277. Portico. https://doi.org/10.1002/admt.202100277
Handle
Azad, M., Chikalov, I., Hussain, S., & Moshkov, M. (2021). Entropy-Based Greedy Algorithm for Decision Trees Using Hypotheses. Entropy, 23(7), 808. https://doi.org/10.3390/e23070808
Handle
Pörtner, H.-O., Scholes, R. J., Agard, J., Archer, E., Bai, X., Barnes, D., Burrows, M., Chan, L., Cheung, W. L. (W., Diamond, S., Donatti, C., Duarte, C., Eisenhauer, N., Foden, W., Gasalla, M. A., Handa, C., Hickler, T., Hoegh-Guldberg, O., Ichii, K., … Ngo, H. (2021). IPBES-IPCC co-sponsored workshop report on biodiversity and climate change (Version 2). Zenodo. https://doi.org/10.5281/ZENODO.4782538
Li, H., Zhou, J., Zhou, Y., Chen, Q., She, Y., Gao, F., … Gao, X. (2021). An Interpretable Computer-Aided Diagnosis Method for Periodontitis From Panoramic Radiographs. Frontiers in Physiology, 12. https://doi.org/10.3389/fphys.2021.655556
Handle
Zhou, J., zhang, bin, Li, H., Zhou, L., Li, Z., Long, Y., … Gao, X. (2021). DeeReCT-TSS: A novel meta-learning-based method annotates TSS in multiple cell types based on DNA sequences and RNA-seq data. https://doi.org/10.21203/rs.3.rs-640669/v1
Handle
Ramirez-Calderon, G., Susapto, H. H., & Hauser, C. A. E. (2021). Delivery of Endothelial Cell-Laden Microgel Elicits Angiogenesis in Self-Assembling Ultrashort Peptide Hydrogels In Vitro. ACS Applied Materials & Interfaces, 13(25), 29281–29292. https://doi.org/10.1021/acsami.1c03787
Handle
Gajdzik, L., DeCarlo, T. M., Aylagas, E., Coker, D. J., Green, A. L., Majoris, J. E., … Berumen, M. L. (2021). A portfolio of climate‐tailored approaches to advance the design of marine protected areas in the Red Sea. Global Change Biology, 27(17), 3956–3968. https://doi.org/10.1111/gcb.15719
Handle
Duarte, C. M., Jamil, T., Gojobori, T., & Alam, I. (2021). Detection of SARS-CoV-2 variants requires urgent global coordination. International Journal of Infectious Diseases, 109, 50–53. https://doi.org/10.1016/j.ijid.2021.06.027
Handle
Duarte, C. M., Jamil, T., Gojobori, T., & Alam, I. (2021). Detection of SARS-CoV-2 variants requires urgent global coordination. International Journal of Infectious Diseases, 109, 50–53. https://doi.org/10.1016/j.ijid.2021.06.027
Duarte, C. M., Jamil, T., Gojobori, T., & Alam, I. (2021). Detection of SARS-CoV-2 variants requires urgent global coordination. International Journal of Infectious Diseases, 109, 50–53. https://doi.org/10.1016/j.ijid.2021.06.027
Handle
Makita, Y., Suzuki, S., Fushimi, K., Shimada, S., Suehisa, A., Hirata, M., … Matsui, M. (2021). Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-23741-5
Handle
Gunner, R. M., Wilson, R. P., Holton, M. D., Hopkins, P., Bell, S. H., Marks, N. J., … Scantlebury, D. M. (2021). Decision rules for determining terrestrial movement and the consequences for filtering high-resolution GPS tracks – A case study using the African Lion (Panthera leo). https://doi.org/10.21203/rs.3.rs-600317/v1
Slater, L. T., Williams, J. A., Karwath, A., Russell, S., Pendleton, S. C., Fanning, H., … Gkoutos, G. V. (2021). Klarigi: Explanations for Semantic Groupings. https://doi.org/10.1101/2021.06.14.448423
Handle
López‐Sandoval, D. C., Duarte, C. M., & Agustí, S. (2021). Nutrient and temperature constraints on primary production and net phytoplankton growth in a tropical ecosystem. Limnology and Oceanography, 66(7), 2923–2935. https://doi.org/10.1002/lno.11849
Handle
López‐Sandoval, D. C., Duarte, C. M., & Agustí, S. (2021). Nutrient and temperature constraints on primary production and net phytoplankton growth in a tropical ecosystem. Limnology and Oceanography, 66(7), 2923–2935. https://doi.org/10.1002/lno.11849
Handle
Mazarrasa, I., Lavery, P., Duarte, C. M., Lafratta, A., Lovelock, C. E., Macreadie, P. I., … Serrano, O. (2021). Factors Determining Seagrass Blue Carbon Across Bioregions and Geomorphologies. Global Biogeochemical Cycles, 35(6). https://doi.org/10.1029/2021gb006935
Handle
Conchouso, D., Al-Ma’abadi, A., Behzad, H., Alarawi, M., Hosokawa, M., Nishikawa, Y., … Gojobori, T. (2021). Integration of Droplet Microfluidic Tools for Single-cell Functional Metagenomics: An Engineering Head Start. https://doi.org/10.36227/techrxiv.14760726.v1
Handle
Mazarrasa, I., Lavery, P., Duarte, C. M., Lafratta, A., Lovelock, C. E., Macreadie, P. I., … Serrano, O. (2021). Factors Determining Seagrass Blue Carbon Across Bioregions and Geomorphologies. Global Biogeochemical Cycles, 35(6). https://doi.org/10.1029/2021gb006935
Handle
Morales-Caselles, C., Viejo, J., Martí, E., González-Fernández, D., Pragnell-Raasch, H., González-Gordillo, J. I., … Cózar, A. (2021). An inshore–offshore sorting system revealed from global classification of ocean litter. Nature Sustainability, 4(6), 484–493. https://doi.org/10.1038/s41893-021-00720-8
Handle
Pei, S., Yu, L., & Zhang, X. (2021). Set-aware Entity Synonym Discovery with Flexible Receptive Fields. IEEE Transactions on Knowledge and Data Engineering, 1–1. https://doi.org/10.1109/tkde.2021.3087532
Handle
Yoshitake, K., Kimura, G., Sakami, T., Watanabe, T., Taniuchi, Y., Kakehi, S., … Gojobori, T. (2021). Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-91615-3
Handle
Primack, R. B., Bates, A. E., & Duarte, C. M. (2021). The conservation and ecological impacts of the COVID-19 pandemic. Biological Conservation, 260, 109204. https://doi.org/10.1016/j.biocon.2021.109204
Handle
Alam, I., Kamau, A. A., Ngugi, D. K., Gojobori, T., Duarte, C. M., & Bajic, V. B. (2021). KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-90799-y
Handle
Slater, L. T., Williams, J. A., Karwath, A., Fanning, H., Ball, S., Schofield, P., … Gkoutos, G. V. (2021). Multi-faceted Semantic Clustering With Text-derived Phenotypes. https://doi.org/10.1101/2021.05.26.21257830
Handle
Guo, K., Wustoni, S., Koklu, A., Díaz-Galicia, E., Moser, M., Hama, A., … Inal, S. (2021). Rapid single-molecule detection of COVID-19 and MERS antigens via nanobody-functionalized organic electrochemical transistors. Nature Biomedical Engineering. https://doi.org/10.1038/s41551-021-00734-9
Handle
Noro, Y., Shimizu, H., Mineta, K., & Gojobori, T. (2021). A single neuron subset governs a single coactive neuron circuit in Hydra vulgaris, representing a possible ancestral feature of neural evolution. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-89325-x
Handle
Noro, Y., Shimizu, H., Mineta, K., & Gojobori, T. (2021). A single neuron subset governs a single coactive neuron circuit in Hydra vulgaris, representing a possible ancestral feature of neural evolution. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-89325-x
Handle
Bank, M. S., Swarzenski, P. W., Duarte, C. M., Rillig, M. C., Koelmans, A. A., Metian, M., Wright, S., Provencher, J. F., Sanden, M., Jordaan, A., Wagner, M., Thiel, M., & Ok, Y. S. (2021). Global Plastic Pollution Observation System to Aid Policy. Environmental Science & Technology, 55(12), 7770–7775. https://doi.org/10.1021/acs.est.1c00818
Handle
Magbool, A., Bahloul, M. A., Ballal, T., Al-Naffouri, T. Y., & Laleg-Kirati, T.-M. (2021). Aortic blood pressure estimation: A hybrid machine-learning and cross-relation approach. Biomedical Signal Processing and Control, 68, 102762. https://doi.org/10.1016/j.bspc.2021.102762
Handle
Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2021). Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology, 4(1). https://doi.org/10.1038/s42003-021-02112-2
Handle
Kulmanov, M., Zhapa-Camacho, F., & Hoehndorf, R. (2021). DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web. Nucleic Acids Research, 49(W1), W140–W146. https://doi.org/10.1093/nar/gkab373
Handle
Bates, A. E., Primack, R. B., Biggar, B. S., Bird, T. J., Clinton, M. E., Command, R. J., Richards, C., Shellard, M., Geraldi, N. R., Vergara, V., Acevedo-Charry, O., Colón-Piñeiro, Z., Ocampo, D., Ocampo-Peñuela, N., Sánchez-Clavijo, L. M., Adamescu, C. M., Cheval, S., Racoviceanu, T., Adams, M. D., … Duarte, C. M. (2021). Global COVID-19 lockdown highlights humans as both threats and custodians of the environment. Biological Conservation, 263, 109175. https://doi.org/10.1016/j.biocon.2021.109175
Bates, A. E., Primack, R. B., & Duarte, C. M. (2021). Global COVID-19 lockdown highlights humans as both threats and custodians of the environment. Biological Conservation, 109175. https://doi.org/10.1016/j.biocon.2021.109175
Handle
Chen, S., Li, Y., Zhang, T., Zhu, X., Sun, S., & Gao, X. (2021). Lunar features detection for energy discovery via deep learning. Applied Energy, 296, 117085. https://doi.org/10.1016/j.apenergy.2021.117085
Handle
Obradovic, M., Sudar-Milovanovic, E., Soskic, S., Essack, M., Arya, S., Stewart, A. J., … Isenovic, E. R. (2021). Leptin and Obesity: Role and Clinical Implication. Frontiers in Endocrinology, 12. https://doi.org/10.3389/fendo.2021.585887
Handle
Zhang, X., Yang, Q., Albaradei, S., Lyu, X., Alamro, H., Salhi, A., … Gao, X. (2021). Rise and fall of the global conversation and shifting sentiments during the COVID-19 pandemic. Humanities and Social Sciences Communications, 8(1). https://doi.org/10.1057/s41599-021-00798-7
Handle
Zhang, J., Vancea, A. I., Shahul Hameed, U. F., & Arold, S. T. (2021). Versatile control of the CDC48 segregase by the plant UBX-containing (PUX) proteins. Computational and Structural Biotechnology Journal, 19, 3125–3132. https://doi.org/10.1016/j.csbj.2021.05.025
Handle
Bahloul, M. A., & Laleg Kirati, T.-M. (2021). Fractional-order model representations of apparent vascular compliance as an alternative in the analysis of arterial stiffness: an in-silico study. Physiological Measurement, 42(4), 045008. https://doi.org/10.1088/1361-6579/abf1b1
Handle
Konovalov, K. A., Wang, W., Wang, G., Goonetilleke, E. C., Gao, X., Wang, D., & Huang, X. (2021). A comprehensive mechanism for 5-carboxylcytosine-induced transcriptional pausing revealed by Markov state models. Journal of Biological Chemistry, 296, 100735. https://doi.org/10.1016/j.jbc.2021.100735
Handle
Huang, N., Nie, F., Ni, P., Luo, F., Gao, X., & Wang, J. (2021). NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks. Bioinformatics. https://doi.org/10.1093/bioinformatics/btab354
Handle
Roth, F., El-Khaled, Y. C., Karcher, D. B., Rädecker, N., Carvalho, S., Duarte, C. M., … Wild, C. (2021). Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities. Marine Pollution Bulletin, 168, 112444. https://doi.org/10.1016/j.marpolbul.2021.112444
Handle
Roth, F., El-Khaled, Y. C., Karcher, D. B., Rädecker, N., Carvalho, S., Duarte, C. M., Silva, L., Calleja, M. Ll., Morán, X. A. G., Jones, B. H., Voolstra, C. R., & Wild, C. (2021). Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities. Marine Pollution Bulletin, 168, 112444. https://doi.org/10.1016/j.marpolbul.2021.112444
Aalismail, N. A., Díaz-Rúa, R., Geraldi, N., Cusack, M., & Duarte, C. M. (2021). Diversity and Sources of Airborne Eukaryotic Communities (AEC) in the Global Dust Belt over the Red Sea. Earth Systems and Environment, 5(2), 459–471. https://doi.org/10.1007/s41748-021-00219-4
Handle
Zhang, D., Yao, L., Chen, K., Yang, Z., Gao, X., & Liu, Y. (2021). Preventing Sensitive Information Leakage from Mobile Sensor Signals via IntegrativeTransformation. IEEE Transactions on Mobile Computing, 1–1. https://doi.org/10.1109/tmc.2021.3078086
Handle
Zhang, S., Yuan, B., Lam, J. H., Zhou, J., Zhou, X., Ramos-Mandujano, G., … Yang, M. (2021). Structure of the full-length human Pannexin1 channel and insights into its role in pyroptosis. Cell Discovery, 7(1). https://doi.org/10.1038/s41421-021-00259-0
Handle
Khan, F., Radovanovic, A., Gojobori, T., & Kaur, M. (2021). IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease. Database, 2021. https://doi.org/10.1093/database/baab022
Handle
Hinnerichs, T., & Hoehndorf, R. (2021). DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug–target interactions. https://doi.org/10.1101/2021.04.28.441733
Handle
Alshehri, S., Susapto, H. H., & Hauser, C. A. E. (2021). Scaffolds from Self-Assembling Tetrapeptides Support 3D Spreading, Osteogenic Differentiation, and Angiogenesis of Mesenchymal Stem Cells. Biomacromolecules, 22(5), 2094–2106. https://doi.org/10.1021/acs.biomac.1c00205
Handle
Wu, D., Ye, M., Lin, G., Gao, X., & Shen, J. (2021). Person Re-Identification by Context-aware Part Attention and Multi-Head Collaborative Learning. IEEE Transactions on Information Forensics and Security, 1–1. https://doi.org/10.1109/tifs.2021.3075894
Handle
Subedi, R. C., Rossbach, S., Kang, C. H., Alkhazragi, O., Sun, X., Holguin-Lerma, J. A., … Ooi, B. S. (2021). Giant clam inspired high-speed photo-conversion for ultraviolet optical wireless communication. Optical Materials Express, 11(5), 1515. https://doi.org/10.1364/ome.423432
Handle
Napolitano, F., Rapakoulia, T., Annunziata, P., Hasegawa, A., Cardon, M., Napolitano, S., … Arner, E. (2021). Automatic identification of small molecules that promote cell conversion and reprogramming. Stem Cell Reports, 16(5), 1381–1390. https://doi.org/10.1016/j.stemcr.2021.03.028
Handle
Martin, C., Zhang, Q., Zhai, D., Zhang, X., & Duarte, C. M. (2021). Anthropogenic litter density and composition data acquired flying commercial drones on sandy beaches along the Saudi Arabian Red Sea. Data in Brief, 36, 107056. https://doi.org/10.1016/j.dib.2021.107056
Handle
Unarta, I. C., Cao, S., Kubo, S., Wang, W., Cheung, P. P.-H., Gao, X., … Huang, X. (2021). Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model. Proceedings of the National Academy of Sciences, 118(17), e2024324118. https://doi.org/10.1073/pnas.2024324118
Handle
Aldehaiman, A., Momin, A. A., Restouin, A., Wang, L., Shi, X., Aljedani, S., … Arold, S. T. (2021). Synergy and allostery in ligand binding by HIV-1 Nef. Biochemical Journal, 478(8), 1525–1545. https://doi.org/10.1042/bcj20201002
Handle
Alghamdi, M., Alhumsi, T. R., Altweijri, I., Alkhamis, W. H., Barasain, O., Cardona-Londoño, K. J., … Bakhrebah, M. A. (2021). Clinical and Genetic Characterization of Craniosynostosis in Saudi Arabia. Frontiers in Pediatrics, 9. https://doi.org/10.3389/fped.2021.582816
Handle
Duarte, C. M., Agusti, S., Barbier, E., Britten, G. L., Castilla, J. C., Gattuso, J.-P., … Worm, B. (2021). Author Correction: Rebuilding marine life. Nature. https://doi.org/10.1038/s41586-021-03271-2
Handle
N’doye, I., Zhang, D., Alouini, M.-S., & Laleg-Kirati, T.-M. (2021). Establishing and Maintaining a Reliable Optical Wireless Communication in Underwater Environment. IEEE Access, 9, 62519–62531. https://doi.org/10.1109/access.2021.3073461
Handle
Bank, M. S., Swarzenski, P. W., Bianchi, G., Metian, M., Ok, Y. S., & Duarte, C. M. (2021). Reimagining aquaculture in the Global South. Science, 372(6539), 247.2–248. https://doi.org/10.1126/science.abi5015
Handle
Hickey, S. M., Radford, B., Callow, J. N., Phinn, S. R., Duarte, C. M., & Lovelock, C. E. (2021). ENSO feedback drives variations in dieback at a marginal mangrove site. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-87341-5
Handle
Goto, K., Mineta, K., Miyazaki, S., & Gojobori, T. (2021). Significant variants of type 2 diabetes in the Arabian Region through an Integration of exome databases. PLOS ONE, 16(4), e0249226. doi:10.1371/journal.pone.0249226
Handle
Slater, L. T., Bradlow, W., Ball, S., Hoehndorf, R., & Gkoutos, G. V. (2021). Improved characterisation of clinical text through ontology-based vocabulary expansion. Journal of Biomedical Semantics, 12(1). https://doi.org/10.1186/s13326-021-00241-5
Handle
Wesselmann, M., Geraldi, N. R., Duarte, C. M., Garcia‐Orellana, J., Díaz‐Rúa, R., Arias‐Ortiz, A., … Marbà, N. (2021). Seagrass (Halophila stipulacea) invasion enhances carbon sequestration in the Mediterranean Sea. Global Change Biology. https://doi.org/10.1111/gcb.15589
Handle
Abouelhoda, M., Mohty, D., Alayary, I., Meyer, B. F., Arold, S. T., Fadel, B. M., & Monies, D. (2021). Data Mining for the Identification of Known and Candidate Transthyretin Amyloidosis Variants in the Saudi Population. https://doi.org/10.21203/rs.3.rs-386081/v1
Handle
Costa, R. M., Cárdenas, A., Loussert-Fonta, C., Toullec, G., Meibom, A., & Voolstra, C. R. (2021). Surface Topography, Bacterial Carrying Capacity, and the Prospect of Microbiome Manipulation in the Sea Anemone Coral Model Aiptasia. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.637834
Handle
Li, P., & Laleg‐Kirati, T. M. (2021). Signal denoising based on the Schrödinger operator’s eigenspectrum and a curvature constraint. IET Signal Processing, 15(3), 195–206. https://doi.org/10.1049/sil2.12023
Handle
N’Doye, I., Cai, W., Alalwan, A., Sun, X., Headary, W. G., Alouini, M.-S., … Laleg-Kirati, T.-M. (2021). Reduction of the beam pointing error for improved free-space optical communication link performance. IFAC Journal of Systems and Control, 16, 100154. https://doi.org/10.1016/j.ifacsc.2021.100154
Handle
Rosentreter, J. A., Borges, A. V., Deemer, B. R., Holgerson, M. A., Liu, S., Song, C., … Eyre, B. D. (2021). Half of global methane emissions come from highly variable aquatic ecosystem sources. Nature Geoscience, 14(4), 225–230. https://doi.org/10.1038/s41561-021-00715-2
Handle
Moshkov, M. (2021). On the depth of decision trees over infinite 1-homogeneous binary information systems. Array, 10, 100060. https://doi.org/10.1016/j.array.2021.100060
Handle
Slater, L. T., Karwath, A., Williams, J. A., Russell, S., Makepeace, S., Carberry, A., … Gkoutos, G. V. (2021). Towards similarity-based differential diagnostics for common diseases. Computers in Biology and Medicine, 133, 104360. https://doi.org/10.1016/j.compbiomed.2021.104360
Handle
Sequeira, A. M. M., O’Toole, M., Keates, T. R., McDonnell, L. H., Braun, C. D., Hoenner, X., Jaine, F. R. A., Jonsen, I. D., Newman, P., Pye, J., Bograd, S. J., Hays, G. C., Hazen, E. L., Holland, M., Tsontos, V. M., Blight, C., Cagnacci, F., Davidson, S. C., Dettki, H., … Weise, M. (2021). A standardisation framework for bio‐logging data to advance ecological research and conservation. Methods in Ecology and Evolution, 12(6), 996–1007. Portico. https://doi.org/10.1111/2041-210x.13593
Handle
Naveed, H., Reglin, C., Schubert, T., Gao, X., Arold, S. T., & Maitland, M. L. (2021). Identifying Novel Drug Targets by iDTPnd: A Case Study of Kinase Inhibitors. Genomics, Proteomics & Bioinformatics. https://doi.org/10.1016/j.gpb.2020.05.006
Handle
Sanderson, L. E., Lanko, K., Alsagob, M., Almass, R., Al-Ahmadi, N., Najafi, M., … Perenthaler, E. (2021). Bi-allelic variants in HOPS complex subunit VPS41 cause cerebellar ataxia and abnormal membrane trafficking. Brain, 144(3), 769–780. https://doi.org/10.1093/brain/awaa459
Handle
Ben Nasser, B., Djemai, M., Defoort, M., & Laleg-Kirati, T.-M. (2021). Time scale observability and constructibility of linear dynamic equations. International Journal of Control, 1–11. https://doi.org/10.1080/00207179.2021.1890823
Handle
Kuwahara, H., & Gao, X. (2021). Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach. Journal of Cheminformatics, 13(1). https://doi.org/10.1186/s13321-021-00506-2
Handle
Eldawlatly, S., Abouelhoda, M., Al-Kadi, O. S., Gojobori, T., Jankovic, B., Khalil, M., … Morsy, A. (2021). Biomedical computing in the Arab world. Communications of the ACM, 64(4), 108–113. doi:10.1145/3447746
Handle
DOI
10.1145/3447746Fan, M., Chen, H., You, C., Liu, L., Gu, Y., Peng, W., … Li, L. (2021). Radiomics of Tumor Heterogeneity in Longitudinal Dynamic Contrast-Enhanced Magnetic Resonance Imaging for Predicting Response to Neoadjuvant Chemotherapy in Breast Cancer. Frontiers in Molecular Biosciences, 8. https://doi.org/10.3389/fmolb.2021.622219
Handle
Lozin, V., & Moshkov, M. (2021). Critical Properties and Complexity Measures of Read-Once Boolean Functions. Annals of Mathematics and Artificial Intelligence, 89(5-6), 595–614. https://doi.org/10.1007/s10472-021-09734-6
Handle
Gunner, R., Wilson, R., Holton, M., Scott, R., Arkwright, A., Fahlman, A., … Eizaguirre, C. (2021). Activity of loggerhead turtles during the U-shaped dive: insights using angular velocity metrics. Endangered Species Research, 45, 1–12. https://doi.org/10.3354/esr01125
Handle
DOI
10.3354/esr01125Gattuso, J.-P., Williamson, P., Duarte, C. M., & Magnan, A. K. (2021). The Potential for Ocean-Based Climate Action: Negative Emissions Technologies and Beyond. Frontiers in Climate, 2. https://doi.org/10.3389/fclim.2020.575716
Handle
Sequeira, A. M. M., O’Toole, M., Keates, T. R., McDonnell, L. H., Braun, C. D., Hoenner, X., … Weise, M. (2021). A standardisation framework for bio‐logging data to advance ecological research and conservation. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210x.13593
Handle
Chalastani, V. I., Tsoukala, V. K., Coccossis, H., & Duarte, C. M. (2021). A bibliometric assessment of progress in marine spatial planning. Marine Policy, 127, 104329. https://doi.org/10.1016/j.marpol.2020.104329
Handle
Bennett, S., Santana‐Garcon, J., Marbà, N., Jorda, G., Anton, A., Apostolaki, E. T., … Duarte, C. M. (2021). Climate‐driven impacts of exotic species on marine ecosystems. Global Ecology and Biogeography, 30(5), 1043–1055. https://doi.org/10.1111/geb.13283
Handle
Rossbach, S., Hume, B. C. C., Cárdenas, A., Perna, G., Voolstra, C. R., & Duarte, C. M. (2021). Flexibility in Red Sea Tridacna maxima Symbiodiniaceae associations supports environmental niche adaptation. Ecology and Evolution, 11(7), 3393–3406. https://doi.org/10.1002/ece3.7299
Handle
Li, P., & Laleg-Kirati, T.-M. (2021). Central Blood Pressure Estimation From Distal PPG Measurement Using Semiclassical Signal Analysis Features. IEEE Access, 9, 44963–44973. https://doi.org/10.1109/access.2021.3065576
Handle
Althubaiti, S., Kulmanov, M., Liu, Y., Gkoutos, G. V., Schofield, P., & Hoehndorf, R. (2021). DeepMOCCA: A pan-cancer prognostic model identifies personalized prognostic markers through graph attention and multi-omics data integration. https://doi.org/10.1101/2021.03.02.433454
Handle
Khan, Z., Kahin, K., & Hauser, C. (2021). Time-dependent pulsing of microfluidic pumps to enhance 3D bioprinting of peptide bioinks. Microfluidics, BioMEMS, and Medical Microsystems XIX. https://doi.org/10.1117/12.2578830
Handle
Liu-Wei, W., Kafkas, Ş., Chen, J., Dimonaco, N. J., Tegnér, J., & Hoehndorf, R. (2021). DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes. Bioinformatics. https://doi.org/10.1093/bioinformatics/btab147
Handle
Li, Z., Li, Y., Zhang, B., Li, Y., Long, Y., Zhou, J., … Gao, X. (2021). DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning. Genomics, Proteomics & Bioinformatics. doi:10.1016/j.gpb.2020.05.004
Handle
Rodríguez, J. P., Fernández-Gracia, J., Duarte, C. M., Irigoien, X., & Eguíluz, V. M. (2021). The global network of ports supporting high seas fishing. Science Advances, 7(9), eabe3470. https://doi.org/10.1126/sciadv.abe3470
Handle
Dasouki, M., Alaiya, A., ElAmin, T., Shinwari, Z., Monies, D., Abouelhoda, M., … Ahmed, S. O. (2021). Comprehensive multi-omics analysis of G6PC3 deficiency-related congenital neutropenia with inflammatory bowel disease. iScience, 24(3), 102214. https://doi.org/10.1016/j.isci.2021.102214
Handle
Gui, S., Zhang, X., Zhong, P., Qiu, S., Wu, M., Ye, J., … Liu, J. (2021). PINE: Universal Deep Embedding for Graph Nodes via Partial Permutation Invariant Set Functions. IEEE Transactions on Pattern Analysis and Machine Intelligence, 1–1. https://doi.org/10.1109/tpami.2021.3061162
Handle
Aldosari, M. N., Yalamanchi, K. K., Gao, X., & Sarathy, S. M. (2021). Predicting entropy and heat capacity of hydrocarbons using machine learning. Energy and AI, 4, 100054. https://doi.org/10.1016/j.egyai.2021.100054
Handle
Weerts, M. J. A., Lanko, K., Guzmán-Vega, F. J., Jackson, A., Ramakrishnan, R., Cardona-Londoño, K. J., … Kievit, A. (2021). Delineating the molecular and phenotypic spectrum of the SETD1B-related syndrome. https://doi.org/10.1101/2021.02.11.430742
Handle
Han, P., Shang, S., Sun, A., Zhao, P., Zheng, K., & Zhang, X. (2021). Point-of-Interest Recommendation with Global and Local Context. IEEE Transactions on Knowledge and Data Engineering, 1–1. https://doi.org/10.1109/tkde.2021.3059744
Handle
Martin, C., Zhang, Q., Zhai, D., Zhang, X., & Duarte, C. M. (2021). Enabling a large-scale assessment of litter along Saudi Arabian red sea shores by combining drones and machine learning. Environmental Pollution, 277, 116730. https://doi.org/10.1016/j.envpol.2021.116730
Handle
Hala, S., Antony, C. P., Momin, A. A., Alshehri, M., Ben-Rached, F., Al-Ahmadi, G., … Pain, A. (2021). Co-occurrence of mcr-1 and mcr-8 genes in multi-drug-resistant Klebsiella pneumoniae from a 2015 clinical isolate. International Journal of Antimicrobial Agents, 57(3), 106303. https://doi.org/10.1016/j.ijantimicag.2021.106303
Handle
Hoshino, K., Maeshiro, T., Nishida, N., Sugiyama, M., Fujita, J., Gojobori, T., & Mizokami, M. (2021). Transmission dynamics of SARS-CoV-2 on the Diamond Princess uncovered using viral genome sequence analysis. Gene, 779, 145496. https://doi.org/10.1016/j.gene.2021.145496
Handle
Kaidarova, B. A., Liu, W., Swanepoel, L., Almansouri, A., Geraldi, N. R., Duarte, C. M., & Kosel, J. (2021). Flexible Hall sensor made of laser-scribed graphene. Npj Flexible Electronics, 5(1). https://doi.org/10.1038/s41528-021-00100-4
Handle
Ahmed, W. W., Farhat, M., Zhang, X., & Wu, Y. (2021). Deterministic and probabilistic deep learning models for inverse design of broadband acoustic cloak. Physical Review Research, 3(1). https://doi.org/10.1103/physrevresearch.3.013142
Handle
Lim, K. K., Rossbach, S., Geraldi, N. R., Serrão, E. A., & Duarte, C. M. (2021). Phylogeographic Analysis Suggests a Recent Population Bottleneck in the Rare Red Sea Tridacna squamosina. Frontiers in Marine Science, 8. https://doi:10.3389/fmars.2021.628142
Handle
Xiao, X., Agustí, S., Yu, Y., Huang, Y., Chen, W., Hu, J., … Duarte, C. M. (2021). Seaweed farms provide refugia from ocean acidification. Science of The Total Environment, 776, 145192. https://doi.org/10.1016/j.scitotenv.2021.145192
Handle
Mankowski, M., & Moshkov, M. (2021). Dynamic Programming Multi-Objective Combinatorial Optimization. Studies in Systems, Decision and Control. https://doi.org/10.1007/978-3-030-63920-4
Handle
Alam, I., Radovanovic, A., Incitti, R., Kamau, A. A., Alarawi, M., Azhar, E. I., & Gojobori, T. (2021). CovMT: an interactive SARS-CoV-2 mutation tracker, with a focus on critical variants. The Lancet Infectious Diseases. https://doi.org/10.1016/s1473-3099(21)00078-5
Handle
Li, Y., Xu, Z., Han, W., Cao, H., Umarov, R., Yan, A., … Gao, X. (2021). HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes. Microbiome, 9(1). doi:10.1186/s40168-021-01002-3
Handle
Ben Nasser, B., Djemai, M., Defoort, M., & Laleg-Kirati, T.-M. (2021). Time scale state feedback h-stabilisation of linear systems under Lipschitz-type disturbances. International Journal of Systems Science, 52(8), 1719–1729. https://doi.org/10.1080/00207721.2020.1869345
Handle
Li, C., Gao, X., & Sun, Q. (2021). Introduction of Progress in Education under Recent Technology Revolution. Mobile Networks and Applications. https://doi.org/10.1007/s11036-021-01732-6
Handle
Vaqué, D., Boras, J. A., Arrieta, J. M., Agustí, S., Duarte, C. M., & Sala, M. M. (2021). Enhanced Viral Activity in the Surface Microlayer of the Arctic and Antarctic Oceans. Microorganisms, 9(2), 317. https://doi.org/10.3390/microorganisms9020317
Handle
Duarte, C. M., Chapuis, L., Collin, S. P., Costa, D. P., Devassy, R. P., Eguiluz, V. M., … Juanes, F. (2021). The soundscape of the Anthropocene ocean. Science, 371(6529), eaba4658. https://doi.org/10.1126/science.aba4658
Handle
De Smit, J. C., Anton, A., Martin, C., Rossbach, S., Bouma, T. J., & Duarte, C. M. (2021). Habitat-forming species trap microplastics into coastal sediment sinks. Science of The Total Environment, 145520. https://doi:10.1016/j.scitotenv.2021.145520
Handle
Shijie Zhang, Hongzhi Yin, Tong Chen, Zi Huang, Lizhen Cui, Xiangliang Zhang, (2021). Graph Embedding for Recommendation against Attribute Inference Attacks. arXiv. Doi: 2101.12549
Handle
DOI
2101.12549Althagafi, A., Alsubaie, L., Kathiresan, N., Mineta, K., Aloraini, T., Almutairi, F., … Hoehndorf, R. (2021). DeepSVP: Integration of genotype and phenotype for structural variant prioritization using deep learning. https://doi.org/10.1101/2021.01.28.428557
Handle
zhu, Yongchun & Zhuang, Fuzhen & Zhang, Xiangliang & Qi, Zhiyuan & Shi, Zhiping & He, Qing. (2021). Combat Data Shift in Few-shot Learning with Knowledge Graph. Ariv. Doi: 2101.11354
Handle
DOI
2101.11354Gallagher, A. J., Shipley, O. N., van Zinnicq Bergmann, M. P. M., Brownscombe, J. W., Dahlgren, C. P., Frisk, M. G., … Duarte, C. M. (2021). Spatial Connectivity and Drivers of Shark Habitat Use Within a Large Marine Protected Area in the Caribbean, The Bahamas Shark Sanctuary. Frontiers in Marine Science, 7. https://doi:10.3389/fmars.2020.608848
Handle
Albuquerque, R., Bode, A., González-Gordillo, J. I., Duarte, C. M., & Queiroga, H. (2021). Trophic Structure of Neuston Across Tropical and Subtropical Oceanic Provinces Assessed With Stable Isotopes. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.606088
Handle
Alam, I., Radovanovic, A., Incitti, R., Kamau, A., Alarawi, M., Azhar, E. I., & Gojobori, T. (2021). An interactive COVID-19 virus Mutation Tracker (CovMT) with a particular focus on critical mutations in the Receptor Binding Domain (RBD) region of the Spike protein. https://doi.org/10.1101/2021.01.22.21249716
Handle
Susapto, H. H., Alhattab, D., Abdelrahman, S., Khan, Z., Alshehri, S., Kahin, K., … Hauser, C. A. E. (2021). Ultrashort Peptide Bioinks Support Automated Printing of Large-Scale Constructs Assuring Long-Term Survival of Printed Tissue Constructs. Nano Letters, 21(7), 2719–2729. https://doi.org/10.1021/acs.nanolett.0c04426
Handle
Xiao, Lin & Zhang, Xiangliang & Jing, Liping & Huang, Chi & Song, Mingyang. (2021). Does Head Label Help for Long-Tailed Multi-Label Text Classification. arXiv. Doi: 2101.09704
Handle
DOI
2101.09704Yu, Junliang & Yin, Hongzhi & Li, Jundong & Wang, Qinyong & Hung, Nguyen & Zhang, Xiangliang. (2021). Self-Supervised Multi-Channel Hypergraph Convolutional Network for Social Recommendation. arXiv. Doi: 2101.06448
Handle
DOI
2101.06448Chaib-Draa, K., Zemouche, A., Bedouhene, F., Rajamani, R., Wang, Y., Karimi, H. R., & Laleg-Kirati, T. M. (2021). Finite-time estimation algorithms for LPV discrete-time systems with application to output feedback stabilization. Automatica, 125, 109436. https://doi.org/10.1016/j.automatica.2020.109436
Handle
Dennison, W. C., Bracken, M. E. S., Brown, M., Bruno, J. F., Carlton, J. T., Carpenter, R. C., … Waycott, M. (2021). Susan Lynn Williams: the Life of an Exceptional Scholar, Leader, and Friend (1951–2018). Estuaries and Coasts, 44(2), 304–311. https://doi.org/10.1007/s12237-020-00886-y
Handle
Cziesielski, M. J., Duarte, C. M., Aalismail, N., Al-Hafedh, Y., Anton, A., Baalkhuyur, F., … Aranda, M. (2021). Investing in Blue Natural Capital to Secure a Future for the Red Sea Ecosystems. Frontiers in Marine Science, 7. https://doi:10.3389/fmars.2020.603722
Handle
Guo, X.-G., Hong, P.-Y., & Laleg-Kirati, T.-M. (2021). Calibration and validation for a real-time membrane bioreactor: A sliding window approach. Journal of Process Control, 98, 92–105. https://doi.org/10.1016/j.jprocont.2020.11.013
Handle
Rossbach, S., Anton, A., & Duarte, C. M. (2021). Drivers of the Abundance of Tridacna spp. Giant Clams in the Red Sea. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.592852
Handle
Kuwahara, H., & Gao, X. (2021). Stable maintenance of hidden switches as a strategy to increase the gene expression stability. Nature Computational Science, 1(1), 62–70. https://doi.org/10.1038/s43588-020-00001-y
Handle
Kuwahara, H., & Gao, X. (2021). Stable maintenance of hidden switches as a strategy to increase the gene expression stability. Nature Computational Science, 1(1), 62–70. https://doi.org/10.1038/s43588-020-00001-y
Handle
Nasser, B., Saito, Y., Alarawi, M., Humam, A. A., Mineta, K., & Gojobori, T. (2021). Characterization of microbiologically influenced corrosion by comprehensive metagenomic analysis of an inland oil field. Gene, 145425. doi:10.1016/j.gene.2021.145425
Handle
Sampaio, E., Santos, C., Rosa, I. C., Ferreira, V., Pörtner, H.-O., Duarte, C. M., … Rosa, R. (2021). Impacts of hypoxic events surpass those of future ocean warming and acidification. Nature Ecology & Evolution, 5(3), 311–321. https://doi.org/10.1038/s41559-020-01370-3
Handle
Mineta, K., Goto, K., Gojobori, T., & Alkuraya, F. S. (2021). Population structure of indigenous inhabitants of Arabia. PLOS Genetics, 17(1), e1009210. https://doi.org/10.1371/journal.pgen.1009210
Handle
Rayapuram, N., Jarad, M., Alhoraibi, H. M., Bigeard, J., Abulfaraj, A. A., Völz, R., … Hirt, H. (2021). Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. Proceedings of the National Academy of Sciences, 118(3), e2004670118. https://doi.org/10.1073/pnas.2004670118
Handle
Salamina, M., Montefiore, B. C., Liu, M., Wood, D. J., Heath, R., Ault, J. R., … Endicott, J. A. (2021). Discriminative SKP2 Interactions with CDK-Cyclin Complexes Support a Cyclin A-Specific Role in p27KIP1 Degradation. Journal of Molecular Biology, 433(5), 166795. https://doi.org/10.1016/j.jmb.2020.166795
Handle
Garcia-Corral, L. S., Duarte, C. M., & Agusti, S. (2021). Plankton Community Metabolism in Western Australia: Estuarine, Coastal and Oceanic Surface Waters. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.582136
Handle
Alghamdi, M. A., Mulla, J., Saheb Sharif-Askari, N., Guzmán-Vega, F. J., Arold, S. T., Abd-Alwahed, M., … Halwani, R. (2021). A Novel Biallelic STING1 Gene Variant Causing SAVI in Two Siblings. Frontiers in Immunology, 11. https://doi.org/10.3389/fimmu.2020.599564
Handle
Han, R., Li, G., & Gao, X. (2021). Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints. Bioinformatics, 37(1), 107–117. https://doi.org/10.1093/bioinformatics/btaa1098
Handle
Zhao, X., Shahul Hameed, U. F., Kharchenko, V., Liao, C., Huser, F., Remington, J. M., … Li, J. (2021). Molecular basis for the adaptive evolution of environment-sensing by H-NS proteins. eLife, 10. https://doi.org/10.7554/elife.57467
Handle
Ye, G., Yin, H., Chen, T., Chen, H., Cui, L., & Zhang, X. (2021). FENet: A Frequency Extraction Network for Obstructive Sleep Apnea Detection. IEEE Journal of Biomedical and Health Informatics, 1–1. https://doi.org/10.1109/jbhi.2021.3050113
Handle
Zhang, L., Fan, M., Napolitano, F., Gao, X., Xu, Y., & Li, L. (2021). Transcriptomic analysis identifies organ-specific metastasis genes and pathways across different primary sites. Journal of Translational Medicine, 19(1). https://doi.org/10.1186/s12967-020-02696-z
Handle
Zhang, L., Zhang, D., Wang, X., Yuan, C., Li, Y., Jia, X., … Huang, X. (2021). 1′-Ribose cyano substitution allows Remdesivir to effectively inhibit nucleotide addition and proofreading during SARS-CoV-2 viral RNA replication. Physical Chemistry Chemical Physics, 23(10), 5852–5863. https://doi.org/10.1039/d0cp05948j
Handle
Alzanbaki, H., Moretti, M., & Hauser, C. A. E. (2021). Engineered Microgels—Their Manufacturing and Biomedical Applications. Micromachines, 12(1), 45. https://doi.org/10.3390/mi12010045
Handle
Zhang, Y. (2021). Computation Offloading and Service Caching in Heterogeneous MEC Wireless Networks. KAUST Research Repository. https://doi.org/10.25781/KAUST-DQ447
Handle
Klevjer, T. A., Martinez, U., Boyra, G., Røstad, A., Kaartvedt, S., & Irigoien, X. (2021). Per station summaries of acoustic water column properties during MALASPINA-2010 [Data set]. PANGAEA - Data Publisher for Earth & Environmental Science. https://doi.org/10.1594/PANGAEA.926619
Handle
Zhang, Z. (2021). Improving the Self-Consistent Field Initial Guess Using a 3D Convolutional Neural Network. KAUST Research Repository. https://doi.org/10.25781/KAUST-542XY
Handle
2020
Piliouras, E., & Laleg-Kirati, T.-M. (2020). Quantum-based interval selection of the Semi-classical Signal Analysis method. 2020 28th European Signal Processing Conference (EUSIPCO). https://doi.org/10.23919/eusipco47968.2020.9287878
Handle
Zhou, G., Wang, J., Zhang, X., Guo, M., & Yu, G. (2020). Predicting functions of maize proteins using graph convolutional network. BMC Bioinformatics, 21(S16). https://doi.org/10.1186/s12859-020-03745-6
Handle
Alam, I., Kamau, A., Gugi, D., Gojobori, T., Duarte, C., & Bajic, V. (2020). KAUST Metagenomic Analysis Platform (KMAP), Enabling Access to Massive Analytics of Re-Annotated Metagenomic Data. Journal is Scientific Reports, https://doi.org/10.1038/s41598-021-90799-y
Handle
Garcias‐Bonet, N., Eguíluz, V. M., Díaz‐Rúa, R., & Duarte, C. M. (2020). Host‐association as major driver of microbiome structure and composition in Red Sea seagrass ecosystems. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15334
Handle
Mineta, K., Goto, K., Gojobori, T., & Alkuraya, F. S. (2020). Indigenous Arabs have an intermediate frequency of a Neanderthal‐derived COVID ‐19 risk haplotype compared with other world populations. Clinical Genetics, 99(3), 484–485. https://doi.org/10.1111/cge.13885
Handle
Karan, R., Mathew, S., Muhammad, R., Bautista, D. B., Vogler, M., Eppinger, J., … Rueping, M. (2020). Understanding High-Salt and Cold Adaptation of a Polyextremophilic Enzyme. Microorganisms, 8(10), 1594. https://doi.org/10.3390/microorganisms8101594
Handle
Chen, J., Althagafi, A., & Hoehndorf, R. (2020). Predicting candidate genes from phenotypes, functions and anatomical site of expression. Bioinformatics. https://doi.org/10.1093/bioinformatics/btaa879
Handle
Yu, G., Liu, X., Wang, J., Domeniconi, C., & Zhang, X. (2020). Flexible Cross-Modal Hashing. IEEE Transactions on Neural Networks and Learning Systems, 1–11. https://doi.org/10.1109/tnnls.2020.3027729
Handle
Hawerkamp, H. C., van Geelen, L., Korte, J., Di Domizio, J., Swidergall, M., Momin, A. A., … Meller, S. (2020). Interleukin-26 activates macrophages and facilitates killing of Mycobacterium tuberculosis. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-73989-y
Handle
Kulmanov, M., Smaili, F. Z., Gao, X., & Hoehndorf, R. (2020). Semantic similarity and machine learning with ontologies. Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbaa199
Handle
Arold, S. T. (2020). Intrinsic negative feedback as a limiting factor for the evolution of higher forms of intelligence. F1000Research, 9, 34. https://doi.org/10.12688/f1000research.22039.2
Handle
Duarte, C. M., Ngugi, D. K., Alam, I., Pearman, J., Kamau, A., Eguiluz, V. M., … Irigoien, X. (2020). Sequencing effort dictates gene discovery in marine microbial metagenomes. Environmental Microbiology, 22(11), 4589–4603. https://doi.org/10.1111/1462-2920.15182
Handle
Zaric, B. L., Radovanovic, J. N., Gluvic, Z., Stewart, A. J., Essack, M., Motwalli, O., … Isenovic, E. R. (2020). Atherosclerosis Linked to Aberrant Amino Acid Metabolism and Immunosuppressive Amino Acid Catabolizing Enzymes. Frontiers in Immunology, 11. https://doi.org/10.3389/fimmu.2020.551758
Handle
Fu, C., Li, Y., Zeng, L., Zhang, H., Tu, C., Zhou, Q., … Luo, Y. (2020). Stocks and losses of soil organic carbon from Chinese vegetated coastal habitats. Global Change Biology, 27(1), 202–214. https://doi.org/10.1111/gcb.15348
Handle
Tietbohl, M. D., Hardenstine, R. S., Tanabe, L. K., Hulver, A. M., & Berumen, M. L. (2020). Intentional partial beaching in a coral reef fish: a newly recorded hunting behaviour of titan triggerfish,
Balistoides viridescens. Journal of Fish Biology, 97(5), 1569–1572. https://doi.org/10.1111/jfb.14513
Handle
Ou, G., Yu, G., Domeniconi, C., Lu, X., & Zhang, X. (2020). Multi-label zero-shot learning with graph convolutional networks. Neural Networks, 132, 333–341. https://doi.org/10.1016/j.neunet.2020.09.010
Handle
Luo, J. Y., Condon, R. H., Stock, C. A., Duarte, C. M., Lucas, C. H., Pitt, K. A., & Cowen, R. K. (2020). Gelatinous Zooplankton‐Mediated Carbon Flows in the Global Oceans: A Data‐Driven Modeling Study. Global Biogeochemical Cycles, 34(9). https://doi.org/10.1029/2020gb006704
Handle
Laptenok, S. P., Martin, C., Genchi, L., Duarte, C. M., & Liberale, C. (2020). Stimulated Raman microspectroscopy as a new method to classify microfibers from environmental samples. Environmental Pollution, 267, 115640. https://doi.org/10.1016/j.envpol.2020.115640
Handle
Alghamdi, M., Bashiri, F. A., Abdelhakim, M., Adly, N., Jamjoom, D. Z., Sumaily, K. M., … Arold, S. T. (2020). Phenotypic and molecular spectrum of pyridoxamine‐5′‐phosphate oxidase deficiency: A scoping review of 87 cases of pyridoxamine‐5′‐phosphate oxidase deficiency. Clinical Genetics, 99(1), 99–110. https://doi.org/10.1111/cge.13843
Handle
Herrera, M., Klein, S. G., Campana, S., Chen, J. E., Prasanna, A., Duarte, C. M., & Aranda, M. (2020). Temperature transcends partner specificity in the symbiosis establishment of a cnidarian. The ISME Journal, 15(1), 141–153. https://doi.org/10.1038/s41396-020-00768-y
Handle
Umair, M., Ballow, M., Asiri, A., Alyafee, Y., Tuwaijri, A., Alhamoudi, K. M., … Alfadhel, M. (2020). EMC10 homozygous variant identified in a family with global developmental delay, mild intellectual disability, and speech delay. Clinical Genetics, 98(6), 555–561. https://doi.org/10.1111/cge.13842
Handle
Auffray, C., Balling, R., Blomberg, N., Bonaldo, M. C., Boutron, B., Brahmachari, S., … Clément, K. (2020). COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight. F1000Research, 9, 1130. https://doi.org/10.12688/f1000research.26098.1
Handle
Alam, I., Aalismail, N., Martin, C., Kamau, A., Guzmán-Vega, F. J., Jamil, T., … Duarte, C. M. (2020). Rapid Evolution of Plastic-degrading Enzymes Prevalent in the Global Ocean. https://doi.org/10.1101/2020.09.07.285692
Handle
Abdel-Haleem, A. M., Ravikumar, V., Ji, B., Mineta, K., Gao, X., Nielsen, J., … Mijakovic, I. (2020). Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli. mSystems, 5(5). https://doi.org/10.1128/msystems.00491-20
Handle
Li, P., & Laleg-Kirati, T.-M. (2020). Schrödinger Spectrum Based PPG Features for the Estimation of the Arterial Blood Pressure. 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). https://doi.org/10.1109/embc44109.2020.9176849
Handle
Magbool, A., Bahloul, M. A., Ballal, T., Al-Naffouri, T. Y., & Laleg-Kirati, T.-M. (2020). Blind Estimation of Central Blood Pressure Using Least-Squares with Mean Matching and Box Constraints. 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). https://doi.org/10.1109/embc44109.2020.9176258
Handle
Chahid, A., Khushaba, R., Al-Jumaily, A., & Laleg-Kirati, T.-M. (2020). A Position Weight Matrix Feature Extraction Algorithm Improves Hand Gesture Recognition. 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). https://doi.org/10.1109/embc44109.2020.9176097
Handle
Jamil, T., Alam, I., Gojobori, T., & Duarte, C. M. (2020). No Evidence for Temperature-Dependence of the COVID-19 Epidemic. Frontiers in Public Health, 8. https://doi.org/10.3389/fpubh.2020.00436
Handle
Bahloul, M. A., Chahid, A., & Laleg-Kirati, T.-M. (2020). Fractional-Order SEIQRDP Model for Simulating the Dynamics of COVID-19 Epidemic. IEEE Open Journal of Engineering in Medicine and Biology, 1, 249–256. https://doi.org/10.1109/ojemb.2020.3019758
Handle
Guan, Q., Sadykov, M., Mfarrej, S., Hala, S., Naeem, R., Nugmanova, R., … Pain, A. (2020). A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic. International Journal of Infectious Diseases, 100, 216–223. https://doi.org/10.1016/j.ijid.2020.08.052
Handle
Mankowski, M., & Moshkov, M. (2020). Extensions of dynamic programming for multi-stage combinatorial optimization. Theoretical Computer Science, 844, 106–132. https://doi.org/10.1016/j.tcs.2020.08.009
Handle
Schmidt-Roach, S., Duarte, C. M., Hauser, C. A. E., & Aranda, M. (2020). Beyond Reef Restoration: Next-Generation Techniques for Coral Gardening, Landscaping, and Outreach. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.00672
Handle
Alam, I., Kamau, A. A., Kulmanov, M., Jaremko, Ł., Arold, S. T., Pain, A., … Duarte, C. M. (2020). Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2. Frontiers in Cellular and Infection Microbiology, 10. https://doi.org/10.3389/fcimb.2020.00405
Handle
Alfares, A., Alsubaie, L., Aloraini, T., Alaskar, A., Althagafi, A., Alahmad, A., … Alfadhel, M. (2020). What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations. BMC Medical Genomics, 13(1). https://doi.org/10.1186/s12920-020-00743-8
Handle
Liu, A., Zhang, Y., Zhang, X., Liu, G., Zhang, Y., Li, Z., … Zhou, X. (2020). Representation Learning with Multi-level Attention for Activity Trajectory Similarity Computation. IEEE Transactions on Knowledge and Data Engineering, 1–1. https://doi.org/10.1109/tkde.2020.3010022
Handle
Ghattassi, M., Laleg, T.-M., & Vivalda, J.-C. (2020). Analysis and output tracking design for the direct contact membrane distillation parabolic system. Journal of Mathematical Analysis and Applications, 491(2), 124367. https://doi.org/10.1016/j.jmaa.2020.124367
Handle
X. Guo, P. Hong, and T. M. Laleg-Kirati, (2020) Nonlinear Model Predictive Control Design for BSM-MBR: Benchmark of Membrane Bioreactor, IFAC World Congress, Berlin,
Handle
Ghaffour, Lilia & Noack, Matti & Reger, Johann & Laleg-Kirati, Taous-Meriem. (2020). Non-asymptotic State Estimation of Linear Reaction Diffusion Equation using Modulating Functions.
Handle
DOI
BAS/1/1627-01-01Yamamoto, N., Ariumi, Y., Nishida, N., Yamamoto, R., Bauer, G., Gojobori, T., … Mizokami, M. (2020). SARS-CoV-2 infections and COVID-19 mortalities strongly correlate with ACE1 I/D genotype. Gene, 758, 144944. https://doi.org/10.1016/j.gene.2020.144944
Handle
Ni, M., Tresset, G., Iliescu, C., & Hauser, C. A. E. (2020). Ultrashort Peptide Theranostic Nanoparticles by Microfluidic-Assisted Rapid Solvent Exchange. IEEE Transactions on NanoBioscience, 19(4), 627–632. https://doi.org/10.1109/tnb.2020.3007103
Handle
Albalawi, F., Alshehri, S., Chahid, A., & Laleg-Kirati, T.-M. (2020). Voxel Weight Matrix-Based Feature Extraction for Biomedical Applications. IEEE Access, 8, 121451–121459. https://doi.org/10.1109/access.2020.3006521
Handle
Yu, G., Wang, Y., Wang, J., Domeniconi, C., Guo, M., & Zhang, X. (2020). Attributed heterogeneous network fusion via collaborative matrix tri-factorization. Information Fusion, 63, 153–165. https://doi.org/10.1016/j.inffus.2020.06.012
Handle
Yu, G., Chen, X., Domeniconi, C., Wang, J., Li, Z., Zhang, Z., & Zhang, X. (2020). CMAL: Cost-effective Multi-label Active Learning by Querying Subexamples. IEEE Transactions on Knowledge and Data Engineering, 1–1. https://doi.org/10.1109/tkde.2020.3003899
Handle
Queralt-Rosinach, N., Bello, S. M., Hoehndorf, R., Weiland, C., Rocca-Serra, P., & Schofield, P. N. (2020). Modeling quantitative traits for COVID-19 case reports. https://doi.org/10.1101/2020.06.18.20135103
Handle
Vu, T.-D., Iwasaki, Y., Shigenobu, S., Maruko, A., Oshima, K., Iioka, E., … Okada, N. (2020). Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens. PLOS Genetics, 16(6), e1008831. https://doi.org/10.1371/journal.pgen.1008831
Handle
Abdelhakim, M., McMurray, E., Syed, A. R., Kafkas, S., Kamau, A. A., Schofield, P. N., & Hoehndorf, R. (2020). DDIEM: drug database for inborn errors of metabolism. Orphanet Journal of Rare Diseases, 15(1). https://doi.org/10.1186/s13023-020-01428-2
Handle
Zhou, L., Li, Z., Zhou, J., Li, H., Chen, Y., Huang, Y., … Gao, X. (2020). A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis. IEEE Transactions on Medical Imaging, 39(8), 2638–2652. https://doi.org/10.1109/tmi.2020.3001810
Handle
S. Asiri, D. Liu and T. Laleg-Kirati, (2020) Selection of Modulating Functions' Design Parameters for Estimation Problems, IEEE Control Systems Letters, vol. 5, no. 1, pp. 277-282, doi: 10.1109/LCSYS.2020.3000849.
Handle
Moraga, P., Ketcheson, D. I., Ombao, H. C., & Duarte, C. M. (2020). Assessing the age- and gender-dependence of the severity and case fatality rates of COVID-19 disease in Spain. Wellcome Open Research, 5, 117. https://doi.org/10.12688/wellcomeopenres.15996.1
Handle
Friis, G., Vizueta, J., Nelson, D. R., Khraiwesh, B., Qudeimat, E., Salehi-Ashtiani, K., … Burt, J. A. (2020). A high-quality genome assembly and annotation of the gray mangrove, Avicennia marina. https://doi.org/10.1101/2020.05.30.124800
Handle
Zhang, Y., Liu, G., Liu, A., Zhang, Y., Li, Z., Zhang, X., & Li, Q. (2020). Personalized Geographical Influence Modeling for POI Recommendation. IEEE Intelligent Systems, 35(5), 18–27. https://doi.org/10.1109/mis.2020.2998040
Handle
Zhang, D., N’Doye, I., Ballal, T., Al-Naffouri, T. Y., Alouini, M.-S., & Laleg-Kirati, T.-M. (2020). Localization and Tracking Control Using Hybrid Acoustic–Optical Communication for Autonomous Underwater Vehicles. IEEE Internet of Things Journal, 7(10), 10048–10060. https://doi.org/10.1109/jiot.2020.2995799
Handle
Slater, L. T., Gkoutos, G. V., & Hoehndorf, R. (2020). Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. https://doi.org/10.1101/2020.05.16.099309
Handle
Ketcheson, D. I., Ombao, H. C., Moraga, P., Ballal, T., & Duarte, C. M. (2020). Estimating and forecasting COVID-19 attack rates and mortality. https://doi.org/10.1101/2020.05.11.20097972
Handle
Albaradei, S., Magana-Mora, A., Thafar, M., Uludag, M., Bajic, V. B., Gojobori, T., … Jankovic, B. R. (2020). Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA. Gene: X, 5, 100035. https://doi.org/10.1016/j.gene.2020.100035
Handle
Chen, H., Ballal, T., Muqaibel, A. H., Zhang, X., & Al-Naffouri, T. Y. (2020). Air-writing via Receiver Array Based Ultrasonic Source Localization. IEEE Transactions on Instrumentation and Measurement, 1–1. https://doi.org/10.1109/tim.2020.2991573
Handle
Mankowski, M., & Moshkov, M. (2020). Dynamic programming bi-criteria combinatorial optimization. Discrete Applied Mathematics, 284, 513–533. https://doi.org/10.1016/j.dam.2020.04.016
Handle
Liu-Wei, W., Kafkas, Ş., Chen, J., Dimonaco, N., Tegnér, J., & Hoehndorf, R. (2020). DeepViral: infectious disease phenotypes improve prediction of novel virus–host interactions. https://doi.org/10.1101/2020.04.22.055095
Handle
Bahloul, M. A., & Laleg-Kirati, T.-M. (2020). Assessment of Fractional-Order Arterial Windkessel as a Model of Aortic Input Impedance. IEEE Open Journal of Engineering in Medicine and Biology, 1, 123–132. https://doi.org/10.1109/ojemb.2020.2988179
Handle
Han, Y., & Zhang, X. (2020). Robust Federated Learning via Collaborative Machine Teaching. Proceedings of the AAAI Conference on Artificial Intelligence, 34(04), 4075–4082. https://doi.org/10.1609/aaai.v34i04.5826
Handle
Essack, M., Salhi, A., Van Neste, C., Raies, A. B., Tifratene, F., Uludag, M., … Bajic, V. P. (2020). DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases. Oxidative Medicine and Cellular Longevity, 2020, 1–13. https://doi.org/10.1155/2020/5904315
Handle
Wang, K., Wang, J., Domeniconi, C., Zhang, X., & Yu, G. (2019). Differentiating isoform functions with collaborative matrix factorization. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz847
Handle
Moshkov, M. (2020). Comparative Analysis of Deterministic and Nondeterministic Decision Trees. Intelligent Systems Reference Library. https://doi.org/10.1007/978-3-030-41728-4
Handle
Gentry, S., Mankowski, M. A., & Michael, T. S. (2020). Maximum matchings in graphs for allocating kidney paired donation. Operations Research for Health Care, 25, 100246. https://doi.org/10.1016/j.orhc.2020.100246
Handle
Nishikawa, Y., Kogawa, M., Hosokawa, M., Mineta, K., Takahashi, K., Sakanashi, C., … Takeyama, H. (2020). Massively parallel single-cell genome sequencing enables high-resolution analysis of soil and marine microbiome. https://doi.org/10.1101/2020.03.05.962001
Handle
Chen, Y., Pu, J., Liu, X., & Zhang, X. (2019). Gaussian mixture embedding of multiple node roles in networks. World Wide Web. doi:10.1007/s11280-019-00743-4
Handle
Vos, R. A., Katayama, T., Mishima, H., Kawano, S., Kawashima, S., Kim, J.-D., … Yamamoto, Y. (2020). BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research, 9, 136. https://doi.org/10.12688/f1000research.18236.1
Handle
alam, I., Kamau, A., Kulmanov, M., Arold, S. T., Pain, A., Gojobori, T., & Duarte, C. M. (2020). Functional pangenome analysis suggests inhibition of the protein E as a readily available therapy for COVID-2019. https://doi.org/10.1101/2020.02.17.952895
Handle
Elkhalil, K., Kammoun, A., Zhang, X., Alouini, M.-S., & Al-Naffouri, T. Y. (2020). Risk Convergence of Centered Kernel Ridge Regression with Large Dimensional Data. ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). doi:10.1109/icassp40776.2020.9053349
Handle
Baalkhuyur, F. M., Qurban, M. A., Panickan, P., & Duarte, C. M. (2020). Microplastics in fishes of commercial and ecological importance from the Western Arabian Gulf. Marine Pollution Bulletin, 152, 110920. https://doi.org/10.1016/j.marpolbul.2020.110920
Handle
Chahid, A., Albalawi, F., Alotaiby, T. N., Al-Hameed, M. H., Alshebeili, S., & Laleg-Kirati, T.-M. (2020). QuPWM: Feature Extraction Method for Epileptic Spike Classification. IEEE Journal of Biomedical and Health Informatics, 24(10), 2814–2824. https://doi.org/10.1109/jbhi.2020.2972286
Handle
AlMuhaizea, M., AlMass, R., AlHargan, A., AlBader, A., Medico Salsench, E., Howaidi, J., … Kaya, N. (2020). Truncating mutations in YIF1B cause a progressive encephalopathy with various degrees of mixed movement disorder, microcephaly, and epilepsy. Acta Neuropathologica, 139(4), 791–794. https://doi.org/10.1007/s00401-020-02128-8
Handle
Guo, X., Albalawi, F., & Laleg-Kirati, T.-M. (2020). Observer-based Economic Model Predictive Control for Direct Contact Membrane Distillation. Chemical Engineering Research and Design, 156, 86–99. https://doi.org/10.1016/j.cherd.2020.01.027
Handle
Baldry, K., Saderne, V., McCorkle, D. C., Churchill, J. H., Agusti, S., & Duarte, C. M. (2020). Anomalies in the carbonate system of Red Sea coastal habitats. Biogeosciences, 17(2), 423–439. https://doi.org/10.5194/bg-17-423-2020
Handle
Bajic, V. P., Essack, M., Zivkovic, L., Stewart, A., Zafirovic, S., Bajic, V. B., … Spremo-Potparevic, B. (2020). The X Files: “The Mystery of X Chromosome Instability in Alzheimer’s Disease.” Frontiers in Genetics, 10. https://doi.org/10.3389/fgene.2019.01368
Handle
Ren, X., Yin, H., Chen, T., Wang, H., Hung, N. Q. V., Huang, Z., & Zhang, X. (2020). CRSAL. ACM Transactions on Information Systems, 38(4), 1–40. https://doi.org/10.1145/3394592
Handle
DOI
10.1145/3394592Meng, Z., Liang, S., Zhang, X., McCreadie, R., & Ounis, I. (2020). Jointly Learning Representations of Nodes and Attributes for Attributed Networks. ACM Transactions on Information Systems, 38(2), 1–32. https://doi.org/10.1145/3377850
Handle
DOI
10.1145/3377850Gluvic, Z. M., Obradovic, M. M., Sudar-Milovanovic, E. M., Zafirovic, S. S., Radak, D. J., Essack, M. M., … Isenovic, E. R. (2020). Regulation of nitric oxide production in hypothyroidism. Biomedicine & Pharmacotherapy, 124, 109881. https://doi.org/10.1016/j.biopha.2020.109881
Handle
Agulles, M., Jordà, G., Jones, B., Agustí, S., & Duarte, C. M. (2020). Temporal evolution of temperatures in the Red Sea and the Gulf of Aden based on in situ observations (1958–2017). Ocean Science, 16(1), 149–166. https://doi.org/10.5194/os-16-149-2020
Handle
Geraldi, N. R., Klein, S. G., Anton, A., & Duarte, C. M. (2020). A framework for experimental scenarios of global change in marine systems using coral reefs as a case study. Royal Society Open Science, 7(1), 191118. https://doi.org/10.1098/rsos.191118
Handle
Bhaduri, S., Chahid, A., Achten, E., Laleg-Kirati, T.-M., & Serrai, H. (2020). SCSA based MATLAB pre-processing toolbox for 1H MR spectroscopic water suppression and denoising. Informatics in Medicine Unlocked, 18, 100294. https://doi.org/10.1016/j.imu.2020.100294
Handle
Ding, L., Liao, S., Liu, Y., Liu, L., Zhu, F., Yao, Y., … Gao, X. (2020). Approximate Kernel Selection via Matrix Approximation. IEEE Transactions on Neural Networks and Learning Systems, 31(11), 4881–4891. https://doi.org/10.1109/tnnls.2019.2958922
Handle
Duarte, C. M., Rodriguez-Navarro, A. B., Delgado-Huertas, A., & Krause-Jensen, D. (2020). Dense Mytilus Beds Along Freshwater-Influenced Greenland Shores: Resistance to Corrosive Waters Under High Food Supply. Estuaries and Coasts, 43(2), 387–395. https://doi.org/10.1007/s12237-019-00682-3
Handle
El-Araby, M. E., Omar, A. M., Soror, S. H., Arold, S. T., Khayat, M. T., Asfour, H. Z., … Elfaky, M. A. (2020). Synthetic bulky NS4A peptide variants bind to and inhibit HCV NS3 protease. Journal of Advanced Research, 24, 251–259. https://doi.org/10.1016/j.jare.2020.01.003
Handle
Agustí, S., Krause, J. W., Marquez, I. A., Wassmann, P., Kristiansen, S., & Duarte, C. M. (2020). Arctic (Svalbard islands) active and exported diatom stocks and cell health status. Biogeosciences, 17(1), 35–45. https://doi.org/10.5194/bg-17-35-2020
Handle
2019
Momin, A. A., Hameed, U. F. S., & Arold, S. T. (2019). Passenger sequences can promote interlaced dimers in a common variant of the maltose-binding protein. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-56718-y
Handle
Jorda, G., Marbà, N., Bennett, S., Santana-Garcon, J., Agusti, S., & Duarte, C. M. (2019). Ocean warming compresses the three-dimensional habitat of marine life. Nature Ecology & Evolution, 4(1), 109–114. https://doi.org/10.1038/s41559-019-1058-0
Handle
Geraldi, N. R., Anton, A., Santana‐Garcon, J., Bennett, S., Marbà, N., Lovelock, C. E., … Duarte, C. M. (2019). Ecological effects of non‐native species in marine ecosystems relate to co‐occurring anthropogenic pressures. Global Change Biology, 26(3), 1248–1258. https://doi.org/10.1111/gcb.14930
Handle
Eguíluz, V. M., Salazar, G., Fernández-Gracia, J., Pearman, J. K., Gasol, J. M., Acinas, S. G., … Duarte, C. M. (2019). Scaling of species distribution explains the vast potential marine prokaryote diversity. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-54936-y
Handle
Siuly, S., & Zhang, X. (2019). Guest Editorial: Special issue on “Application of artificial intelligence in health research.” Health Information Science and Systems, 8(1). https://doi.org/10.1007/s13755-019-0089-x
Handle
Jia, G., Li, Y., Zhang, H., Chattopadhyay, I., Boeck Jensen, A., Blair, D. R., … Rzhetsky, A. (2019). Estimating heritability and genetic correlations from large health datasets in the absence of genetic data. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-13455-0
Handle
Naveed, H., Reglin, C., Schubert, T., Gao, X., Arold, S. T., & Maitland, M. L. (2019). Identifying Novel Targets by using Drug-binding Site Signature: A Case Study of Kinase Inhibitors. https://doi.org/10.1101/860510
Handle
DOI
10.1101/860510Boumenir, A., Ghattassi, M., & Laleg‐Kirati, T. M. (2019). Monitoring the temperature of a direct contact membrane distillation. Mathematical Methods in the Applied Sciences, 43(3), 1399–1408. https://doi.org/10.1002/mma.5966
Handle
DOI
10.1002/mma.5966Alghamdi, M., Al Khalifah, R., Al Homyani, D. K., Alkhamis, W. H., Arold, S. T., Ekhzaimy, A., … Halwani, R. (2019). A Novel TBX1 Variant Causing Hypoparathyroidism and Deafness. Journal of the Endocrine Society, 4(2). https://doi.org/10.1210/jendso/bvz028
Handle
Sola, J., Klein, S. G., Martin, C., Agustí, S., & Duarte, C. M. (2019). Gelatinous Zooplankton in the Surface Layers of the Coastal Central Red Sea. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00726
Handle
Chen, Y., Pu, J., Liu, X., & Zhang, X. (2019). Gaussian mixture embedding of multiple node roles in networks. World Wide Web, 23(2), 927–950. https://doi.org/10.1007/s11280-019-00743-4
Handle
Rossbach, S., Cardenas, A., Perna, G., Duarte, C. M., & Voolstra, C. R. (2019). Tissue-Specific Microbiomes of the Red Sea Giant Clam Tridacna maxima Highlight Differential Abundance of Endozoicomonadaceae. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.02661
Handle
Garrabou, J., Gómez-Gras, D., Ledoux, J.-B., Linares, C., Bensoussan, N., López-Sendino, P., … Grimes, S. (2019). Collaborative Database to Track Mass Mortality Events in the Mediterranean Sea. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00707
Handle
Althubaiti, S., Karwath, A., Dallol, A., Noor, A., Alkhayyat, S. S., Alwassia, R., … Hoehndorf, R. (2019). Ontology-based prediction of cancer driver genes. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-53454-1
Handle
Rabaoui, L., Cusack, M., Saderne, V., Krishnakumar, P. K., Lin, Y.-J., Shemsi, A. M., … Qurban, M. A. (2020). Anthropogenic-induced acceleration of elemental burial rates in blue carbon repositories of the Arabian Gulf. Science of The Total Environment, 719, 135177. https://doi.org/10.1016/j.scitotenv.2019.135177
Handle
Qashqari, M. S., Garcias-Bonet, N., Fusi, M., Booth, J. M., Daffonchio, D., & Duarte, C. M. (2020). High temperature and crab density reduce atmospheric nitrogen fixation in Red Sea mangrove sediments. Estuarine, Coastal and Shelf Science, 232, 106487. https://doi.org/10.1016/j.ecss.2019.106487
Handle
Tan, Q., Yu, G., Wang, J., Domeniconi, C., & Zhang, X. (2021). Individuality- and Commonality-Based Multiview Multilabel Learning. IEEE Transactions on Cybernetics, 51(3), 1716–1727. https://doi.org/10.1109/tcyb.2019.2950560
Handle
Klein, S. G., Steckbauer, A., & Duarte, C. M. (2019). Defining CO2and O2syndromes of marine biomes in the Anthropocene. Global Change Biology, 26(2), 355–363. https://doi.org/10.1111/gcb.14879
Handle
Koutsaviti, A., Daskalaki, M. G., Agusti, S., Kampranis, S. C., Tsatsanis, C., Duarte, C. M., … Ioannou, E. (2019). Thuwalallenes A–E and Thuwalenynes A–C: New C15 Acetogenins with Anti-Inflammatory Activity from a Saudi Arabian Red Sea Laurencia sp. Marine Drugs, 17(11), 644. https://doi.org/10.3390/md17110644
Handle
Bendevis, P., Karam, A., & Laleg-Kirati, T.-M. (2020). Optimal model-free control of solar thermal membrane distillation system. Computers & Chemical Engineering, 133, 106622. https://doi.org/10.1016/j.compchemeng.2019.106622
Handle
Wang, K., Wang, J., Domeniconi, C., Zhang, X., & Yu, G. (2019). Differentiating isoform functions with collaborative matrix factorization. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz847
Handle
Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., … Pain, A. (2019). The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host-switching. https://doi.org/10.1101/841171
Handle
DOI
10.1101/841171Kulmanov, M., & Hoehndorf, R. (2019). DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. https://doi.org/10.1101/839332
Handle
DOI
10.1101/839332Fischer, J., Renn, D., Quitterer, F., Radhakrishnan, A., Liu, M., Makki, A., … Eppinger, J. (2019). Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers. ACS Catalysis, 9(12), 11371–11380. https://doi.org/10.1021/acscatal.9b02896
Handle
Saderne, V., Baldry, K., Anton, A., Agustí, S., & Duarte, C. M. (2019). Characterization of the CO
2
System in a Coral Reef, a Seagrass Meadow, and a Mangrove Forest in the Central Red Sea. Journal of Geophysical Research: Oceans, 124(11), 7513–7528. https://doi.org/10.1029/2019jc015266
Handle
Aldoghaither, A., & Laleg-Kirati, T.-M. (2020). Parameter and differentiation order estimation for a two dimensional fractional partial differential equation. Journal of Computational and Applied Mathematics, 369, 112570. https://doi.org/10.1016/j.cam.2019.112570
Handle
Liu, H., Wen, J., Jing, L., Yu, J., Zhang, X., & Zhang, M. (2019). In2Rec. Proceedings of the 28th ACM International Conference on Information and Knowledge Management. https://doi.org/10.1145/3357384.3358017
Handle
Geraldi, N. R., Díaz‐Rúa, R., Shea, L. A., & Duarte, C. M. (2019). Performance of extraction methods for extracellular DNA from sediments across marine habitats. Environmental DNA, 2(1), 91–98. https://doi.org/10.1002/edn3.48
Handle
DOI
10.1002/edn3.48Sequeira, A. M. M., Hays, G. C., Sims, D. W., Eguíluz, V. M., Rodríguez, J. P., Heupel, M. R., … Duarte, C. M. (2019). Overhauling Ocean Spatial Planning to Improve Marine Megafauna Conservation. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00639
Handle
Lam, J. H., Li, Y., Zhu, L., Umarov, R., Jiang, H., Héliou, A., … Gao, X. (2019). A deep learning framework to predict binding preference of RNA constituents on protein surface. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-12920-0
Handle
Chen, Y., Sun, K., Pu, J., Xiong, Z., & Zhang, X. (2020). GraPASA: Parametric graph embedding via siamese architecture. Information Sciences, 512, 1442–1457. https://doi.org/10.1016/j.ins.2019.10.027
Handle
Chen, Y., Sun, K., Pu, J., Xiong, Z., & Zhang, X. (2019). GraPASA: Parametric Graph Embedding via Siamese Architecture. Information Sciences. https://doi.org/10.1016/j.ins.2019.10.027
Handle
Fernández de Puelles, Gazá, Cabanellas-Reboredo, Santandreu, Irigoien, González-Gordillo, & Duarte. (2019). Zooplankton Abundance and Diversity in the Tropical and Subtropical Ocean. Diversity, 11(11), 203. https://doi.org/10.3390/d11110203
Handle
Giner, C. R., Pernice, M. C., Balagué, V., Duarte, C. M., Gasol, J. M., Logares, R., & Massana, R. (2019). Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean. The ISME Journal, 14(2), 437–449. https://doi.org/10.1038/s41396-019-0506-9
Handle
Xiao, X., Agusti, S., Lin, F., Xu, C., Yu, Y., Pan, Y., … Duarte, C. M. (2019). Resource (Light and Nitrogen) and Density-Dependence of Seaweed Growth. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00618
Handle
Han, R., Li, L., Yang, P., Zhang, F., & Gao, X. (2019). A novel constrained reconstruction model towards high-resolution subtomogram averaging. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz787
Handle
Xiao, X., Agustí, S., Pan, Y., Yu, Y., Li, K., Wu, J., & Duarte, C. M. (2019). Warming Amplifies the Frequency of Harmful Algal Blooms with Eutrophication in Chinese Coastal Waters. Environmental Science & Technology, 53(22), 13031–13041. https://doi.org/10.1021/acs.est.9b03726
Handle
Han, R., Wang, S., & Gao, X. (2019). Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz742
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Obradovic, M., Zafirovic, S., Essack, M., Dimitrov, J., Zivkovic, L., Spremo-Potparevic, B., … Isenovic, E. R. (2020). Antioxidant enzymes expression in lymphocytes of patients undergoing carotid endarterectomy. Medical Hypotheses, 134, 109419. https://doi.org/10.1016/j.mehy.2019.109419
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Lee, M. A., Duarte, C. M., Eguíluz, V. M., Heller, D. A., Langer, R., Meekan, M. G., … Wilson, R. P. (2019). Can Fish and Cell Phones Teach Us about Our Health? ACS Sensors, 4(10), 2566–2570. https://doi.org/10.1021/acssensors.9b00947
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Serrano, O., Lovelock, C. E., B. Atwood, T., Macreadie, P. I., Canto, R., Phinn, S., … Duarte, C. M. (2019). Australian vegetated coastal ecosystems as global hotspots for climate change mitigation. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-12176-8
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Yang, Z., Yu, G., Guo, M., Yu, J., Zhang, X., & Wang, J. (2019). CDPath: Cooperative driver pathways discovery using integer linear programming and Markov clustering. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1–1. https://doi.org/10.1109/tcbb.2019.2945029
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Aalismail, N. A., Ngugi, D. K., Díaz-Rúa, R., Alam, I., Cusack, M., & Duarte, C. M. (2019). Functional metagenomic analysis of dust-associated microbiomes above the Red Sea. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-50194-0
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Zhao, Y., Wang, J., Guo, M., Zhang, X., & Yu, G. (2019). Cross-Species Protein Function Prediction with Asynchronous-Random Walk. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1–1. https://doi.org/10.1109/tcbb.2019.2943342
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Martin, C., Corona, E., Mahadik, G. A., & Duarte, C. M. (2019). Adhesion to coral surface as a potential sink for marine microplastics. Environmental Pollution, 255, 113281. https://doi.org/10.1016/j.envpol.2019.113281
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Karimi, M. A., Zhang, Q., Kuo, Y. H., Shaikh, S. F., Kaidarova, A., Geraldi, N., … Shamim, A. (2019). Flexible tag design for semi-continuous wireless data acquisition from marine animals. Flexible and Printed Electronics, 4(3), 035006. https://doi.org/10.1088/2058-8585/ab423f
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Nagai, S., Chen, H., Kawakami, Y., Yamamoto, K., Sildever, S., Kanno, N., … Gojobori, T. (2019). Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS)-based technique. Harmful Algae, 89, 101660. https://doi.org/10.1016/j.hal.2019.101660
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Macreadie, P. I., Anton, A., Raven, J. A., Beaumont, N., Connolly, R. M., Friess, D. A., … Duarte, C. M. (2019). The future of Blue Carbon science. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-11693-w
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Obradovic, M., Essack, M., Zafirovic, S., Sudar‐Milovanovic, E., Bajic, V. P., Van Neste, C., … Isenovic, E. R. (2020). Redox control of vascular biology. BioFactors, 46(2), 246–262. https://doi.org/10.1002/biof.1559
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Giomi, F., Barausse, A., Duarte, C. M., Booth, J., Agusti, S., Saderne, V., … Fusi, M. (2019). Oxygen supersaturation protects coastal marine fauna from ocean warming. Science Advances, 5(9), eaax1814. https://doi.org/10.1126/sciadv.aax1814
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Hawerkamp, H. C., Kislat, A., Gerber, P. A., Pollet, M., Rolfes, K. M., Soshilov, A. A., … Meller, S. (2019). Vemurafenib acts as an aryl hydrocarbon receptor antagonist: Implications for inflammatory cutaneous adverse events. Allergy, 74(12), 2437–2448. https://doi.org/10.1111/all.13972
Handle
Othoum, G., Bougouffa, S., Bokhari, A., Lafi, F. F., Gojobori, T., Hirt, H., … Essack, M. (2019). Mining biosynthetic gene clusters in Virgibacillus genomes. BMC Genomics, 20(1). https://doi.org/10.1186/s12864-019-6065-7
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Sanada, T., Tsukiyama-Kohara, K., Shin-I, T., Yamamoto, N., Kayesh, M. E. H., Yamane, D., … Kohara, M. (2019). Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-48867-x
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Kaidarova, A., Almoudi, A., Allagani, R. M., Marengo, M., Khan, M. A., Buttner, U., … Kosel, J. (2019). Flexible and Multi-Functional Graphene Sensor Platform. 2019 IEEE International Conference on Flexible and Printable Sensors and Systems (FLEPS). https://doi.org/10.1109/fleps.2019.8792302
Handle
Kaidarova, A., Almoudi, A., Allagani, R. M., Marengo, M., Khan, M. A., Buttner, U., … Kosel, J. (2019). Flexible and Multi-Functional Graphene Sensor Platform. 2019 IEEE International Conference on Flexible and Printable Sensors and Systems (FLEPS). https://doi.org/10.1109/fleps.2019.8792302
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Kaidaorva, A., Marengo, M., Marinaro, G., Geraldi, N. R., Wilson, R., Duarte, C. M., & Kosel, J. (2019). Flexible, four-electrode conductivity cell for biologging applications. Results in Materials, 1, 100009. https://doi.org/10.1016/j.rinma.2019.100009
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Ortega, A., Geraldi, N. R., Alam, I., Kamau, A. A., Acinas, S. G., Logares, R., … Duarte, C. M. (2019). Important contribution of macroalgae to oceanic carbon sequestration. Nature Geoscience, 12(9), 748–754. https://doi.org/10.1038/s41561-019-0421-8
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Sanz-Martín, M., Vernet, M., Cape, M. R., Mesa, E., Delgado-Huertas, A., Reigstad, M., … Duarte, C. M. (2019). Relationship Between Carbon- and Oxygen-Based Primary Productivity in the Arctic Ocean, Svalbard Archipelago. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00468
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López-Sandoval, D. C., Rowe, K., Carillo-de-Albonoz, P., Duarte, C. M., & Agustí, S. (2019). Rates and drivers of Red Sea plankton community metabolism. Biogeosciences, 16(15), 2983–2995. https://doi.org/10.5194/bg-16-2983-2019
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Kaidarova, A., Khan, M. A., Marengo, M., Swanepoel, L., Przybysz, A., Muller, C., … Kosel, J. (2019). Wearable multifunctional printed graphene sensors. Npj Flexible Electronics, 3(1). https://doi.org/10.1038/s41528-019-0061-5
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López-Sandoval, D. C., Rowe, K., Carillo-de-Albonoz, P., Duarte, C. M., & Agustí, S. (2019). Rates and drivers of Red Sea plankton community metabolism. Biogeosciences, 16(15), 2983–2995. https://doi.org/10.5194/bg-16-2983-2019
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Yao, S., Yu, G., Wang, J., Domeniconi, C., & Zhang, X. (2019). Multi-View Multiple Clustering. Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence. https://doi.org/10.24963/ijcai.2019/572
Handle
Pei, S., Yu, L., & Zhang, X. (2019). Improving Cross-lingual Entity Alignment via Optimal Transport. Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence. https://doi.org/10.24963/ijcai.2019/448
Handle
Chen, X., Yu, G., Wang, J., Domeniconi, C., Li, Z., & Zhang, X. (2019). ActiveHNE: Active Heterogeneous Network Embedding. Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence. https://doi.org/10.24963/ijcai.2019/294
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De los Santos, C. B., Krause-Jensen, D., Alcoverro, T., Marbà, N., Duarte, C. M., van Katwijk, M. M., … Santos, R. (2019). Recent trend reversal for declining European seagrass meadows. Nature Communications, 10(1). https://doi.org/10.1038/s41467-019-11340-4
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Yan, R., Le, R., Song, Y., Zhang, T., Zhang, X., & Zhao, D. (2019). Interview Choice Reveals Your Preference on the Market. Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining. https://doi.org/10.1145/3292500.3330963
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Klein, S. G., Pitt, K. A., Lucas, C. H., Hung, S.-H., Schmidt-Roach, S., Aranda, M., & Duarte, C. M. (2019). Night-Time Temperature Reprieves Enhance the Thermal Tolerance of a Symbiotic Cnidarian. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00453
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Queiroz, N., Humphries, N. E., Couto, A., Vedor, M., da Costa, I., Sequeira, A. M. M., … Abercrombie, D. L. (2019). Global spatial risk assessment of sharks under the footprint of fisheries. Nature, 572(7770), 461–466. https://doi.org/10.1038/s41586-019-1444-4
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Jin, P., Overmans, S., Duarte, C. M., & Agustí, S. (2019). Increasing temperature within thermal limits compensates negative ultraviolet‐B radiation effects in terrestrial and aquatic organisms. Global Ecology and Biogeography, 28(11), 1695–1711. https://doi.org/10.1111/geb.12973
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Peng, C., Duarte, C. M., Costa, D. P., Guinet, C., Harcourt, R. G., Hindell, M. A., … Zhang, X. (2019). Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species. Applied Sciences, 9(14), 2935. https://doi.org/10.3390/app9142935
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Mazarrasa, I., Marbà, N., Krause-Jensen, D., Kennedy, H., Santos, R., Lovelock, C. E., & Duarte, C. M. (2019). Decreasing carbonate load of seagrass leaves with increasing latitude. Aquatic Botany, 159, 103147. https://doi.org/10.1016/j.aquabot.2019.103147
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Zhao, J., Shang, S., Wang, P., Lui, J. C., & Zhang, X. (2019). Submodular Optimization over Streams with Inhomogeneous Decays. Proceedings of the AAAI Conference on Artificial Intelligence, 33(01), 5861-5868. https://doi.org/10.1609/aaai.v33i01.33015861
Yu, L., Zhang, C., Liang, S., & Zhang, X. (2019). Multi-Order Attentive Ranking Model for Sequential Recommendation. Proceedings of the AAAI Conference on Artificial Intelligence, 33, 5709–5716. https://doi.org/10.1609/aaai.v33i01.33015709
Mahadik, G. A., Agusti, S., & Duarte, C. M. (2019). Distribution and Characteristics of Halobates germanus Population in the Red Sea. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00408
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Sequeira, A. M. M., Heupel, M. R., Lea, M. ‐A., Eguíluz, V. M., Duarte, C. M., Meekan, M. G., … Hays, G. C. (2019). The importance of sample size in marine megafauna tagging studies. Ecological Applications, 29(6). https://doi.org/10.1002/eap.1947
Handle
DOI
10.1002/eap.1947Rossbach, S., Saderne, V., Anton, A., & Duarte, C. M. (2019). Light-dependent calcification in Red Sea giant clam <i>Tridacna maxima</i> Biogeosciences, 16(13), 2635–2650. https://doi.org/10.5194/bg-16-2635-2019
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Han, R., Bao, Z., Zeng, X., Niu, T., Zhang, F., Xu, M., & Gao, X. (2019). A joint method for marker-free alignment of tilt series in electron tomography. Bioinformatics, 35(14), i249–i259. https://doi.org/10.1093/bioinformatics/btz323
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Duffy, J. E., Benedetti-Cecchi, L., Trinanes, J., Muller-Karger, F. E., Ambo-Rappe, R., Boström, C., … Yaakub, S. M. (2019). Toward a Coordinated Global Observing System for Seagrasses and Marine Macroalgae. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00317
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Krause-Jensen, D., Sejr, M. K., Bruhn, A., Rasmussen, M. B., Christensen, P. B., Hansen, J. L. S., … Wegeberg, S. (2019). Deep Penetration of Kelps Offshore Along the West Coast of Greenland. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00375
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Wilson, R. P., Börger, L., Holton, M. D., Scantlebury, D. M., Gómez‐Laich, A., Quintana, F., … Shepard, E. L. C. (2019). Estimates for energy expenditure in free‐living animals using acceleration proxies: A reappraisal. Journal of Animal Ecology, 89(1), 161–172. https://doi.org/10.1111/1365-2656.13040
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Sanz-Martín, M., Hendriks, I. E., Carstensen, J., Marbà, N., Krause-Jensen, D., Sejr, M. K., & Duarte, C. M. (2019). Continuous photoperiod of the Artic summer stimulates the photosynthetic response of some marine macrophytes. Aquatic Botany, 158, 103126. https://doi.org/10.1016/j.aquabot.2019.06.005
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Harcourt, R., Sequeira, A. M. M., Zhang, X., Roquet, F., Komatsu, K., Heupel, M., … Carroll, G. (2019). Animal-Borne Telemetry: An Integral Component of the Ocean Observing Toolkit. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00326
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Ramajo, L., Lagos, N. A., & Duarte, C. M. (2019). Seagrass Posidonia oceanica diel pH fluctuations reduce the mortality of epiphytic forams under experimental ocean acidification. Marine Pollution Bulletin, 146, 247–254. https://doi.org/10.1016/j.marpolbul.2019.06.011
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Ni, M., Zhuo, S., Iliescu, C., So, P. T. C., Mehta, J. S., Yu, H., & Hauser, C. A. E. (2019). Self‐assembling amyloid‐like peptides as exogenous second harmonic probes for bioimaging applications. Journal of Biophotonics, 12(12). https://doi.org/10.1002/jbio.201900065
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Iuculano, F., Álverez-Salgado, X. A., Otero, J., Catalá, T. S., Sobrino, C., Duarte, C. M., & Agustí, S. (2019). Patterns and Drivers of UV Absorbing Chromophoric Dissolved Organic Matter in the Euphotic Layer of the Open Ocean. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00320
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Martin, C., Agustí, S., & Duarte, C. M. (2019). Seasonality of marine plastic abundance in central Red Sea pelagic waters. Science of The Total Environment, 688, 536–541. https://doi.org/10.1016/j.scitotenv.2019.06.240
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Bennett, S., Duarte, C. M., Marbà, N., & Wernberg, T. (2019). Integrating within-species variation in thermal physiology into climate change ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1778), 20180550. https://doi.org/10.1098/rstb.2018.0550
Handle
Zhao, J., Shang, S., Wang, P., Lui, J. C. S., & Zhang, X. (2019). Tracking Influential Nodes in Time-Decaying Dynamic Interaction Networks. 2019 IEEE 35th International Conference on Data Engineering (ICDE). https://doi.org/10.1109/icde.2019.00102
Handle
Siuly, S., & Zhang, X. (2019). Guest Editorial: Special issue on “Application of artificial intelligence in health research.” Health Information Science and Systems, 8(1). https://doi.org/10.1007/s13755-019-0089-x
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Yahya, R. Z., Arrieta, J. M., Cusack, M., & Duarte, C. M. (2019). Airborne Prokaryote and Virus Abundance Over the Red Sea. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.01112
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Krause, J. W., Schulz, I. K., Rowe, K. A., Dobbins, W., Winding, M. H. S., Sejr, M. K., … Agustí, S. (2019). Silicic acid limitation drives bloom termination and potential carbon sequestration in an Arctic bloom. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-44587-4
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Garcias-Bonet, N., Delgado-Huertas, A., Carrillo-de-Albornoz, P., Anton, A., Almahasheer, H., Marbà, N., … Duarte, C. M. (2019). Carbon and Nitrogen Concentrations, Stocks, and Isotopic Compositions in Red Sea Seagrass and Mangrove Sediments. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00267
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Arossa, S., Martin, C., Rossbach, S., & Duarte, C. M. (2019). Microplastic removal by Red Sea giant clam (Tridacna maxima). Environmental Pollution, 252, 1257–1266. https://doi.org/10.1016/j.envpol.2019.05.149
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Mankowski, M. A., Kosztowski, M., Raghavan, S., Garonzik‐Wang, J. M., Axelrod, D., Segev, D. L., & Gentry, S. E. (2019). Accelerating kidney allocation: Simultaneously expiring offers. American Journal of Transplantation, 19(11), 3071–3078. https://doi.org/10.1111/ajt.15396
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Wang, W., Zhao, M., Gao, Z., Xu, G., Xian, H., Li, Y., & Zhang, X. (2019). Constructing Features for Detecting Android Malicious Applications: Issues, Taxonomy and Directions. IEEE Access, 7, 67602–67631. https://doi.org/10.1109/access.2019.2918139
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Geraldi, N. R., Ortega, A., Serrano, O., Macreadie, P. I., Lovelock, C. E., Krause-Jensen, D., … Duarte, C. M. (2019). Fingerprinting Blue Carbon: Rationale and Tools to Determine the Source of Organic Carbon in Marine Depositional Environments. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00263
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Yang, Q., Li, Z., Liu, A., Liu, G., Zhao, L., Zhang, X., … Zhou, X. (2019). A novel hybrid publication recommendation system using compound information. World Wide Web, 22(6), 2499–2517. https://doi.org/10.1007/s11280-019-00687-9
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Pu, J., Wang, Y., Liu, X., & Zhang, X. (2019). STLP-OD: Spatial and Temporal Label Propagation for Traffic Outlier Detection. IEEE Access, 7, 63036–63044. https://doi.org/10.1109/access.2019.2916853
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Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2019). Metabolic Architecture of the Deep Ocean Microbiome. https://doi.org/10.1101/635680
Handle
DOI
10.1101/635680Acinas, S. G., Sánchez, P., Salazar, G., Cornejo-Castillo, F. M., Sebastián, M., Logares, R., … Gasol, J. M. (2019). Metabolic Architecture of the Deep Ocean Microbiome. https://doi.org/10.1101/635680
Handle
DOI
10.1101/635680Pei, S., Yu, L., Hoehndorf, R., & Zhang, X. (2019). Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference. The World Wide Web Conference on - WWW ’19. https://doi.org/10.1145/3308558.3313646
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Berumen, M. L., Voolstra, C. R., Daffonchio, D., Agusti, S., Aranda, M., Irigoien, X., … Duarte, C. M. (2019). The Red Sea: Environmental Gradients Shape a Natural Laboratory in a Nascent Ocean. Coral Reefs of the World, 1–10. https://doi.org/10.1007/978-3-030-05802-9_1
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Ruiz‐González, C., Logares, R., Sebastián, M., Mestre, M., Rodríguez‐Martínez, R., Galí, M., … Gasol, J. M. (2019). Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean. Molecular Ecology, 28(8), 1930–1945. https://doi.org/10.1111/mec.15026
Handle
Ruiz‐González, C., Logares, R., Sebastián, M., Mestre, M., Rodríguez‐Martínez, R., Galí, M., … Gasol, J. M. (2019). Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean. Molecular Ecology, 28(8), 1930–1945. https://doi.org/10.1111/mec.15026
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Guan, Y., Ngugi, D. K., Vinu, M., Blom, J., Alam, I., Guillot, S., … Stingl, U. (2019). Comparative Genomics of the Genus Methanohalophilus, Including a Newly Isolated Strain From Kebrit Deep in the Red Sea. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00839
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Zhai, D., Liu, A., Chen, S., Li, Z., & Zhang, X. (2019). SeqST-ResNet: A Sequential Spatial Temporal ResNet for Task Prediction in Spatial Crowdsourcing. Lecture Notes in Computer Science, 260–275. https://doi.org/10.1007/978-3-030-18576-3_16
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Wang, Y., Yu, G., Domeniconi, C., Wang, J., Zhang, X., & Guo, M. (2019). Selective Matrix Factorization for Multi-relational Data Fusion. Lecture Notes in Computer Science, 313–329. https://doi.org/10.1007/978-3-030-18576-3_19
Geraldi, N. R., Anton, A., Lovelock, C. E., & Duarte, C. M. (2019). Are the ecological effects of the “worst” marine invasive species linked with scientific and media attention? PLOS ONE, 14(4), e0215691. https://doi.org/10.1371/journal.pone.0215691
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Anton, A., Geraldi, N. R., Lovelock, C. E., Apostolaki, E. T., Bennett, S., Cebrian, J., … Duarte, C. M. (2019). Global ecological impacts of marine exotic species. Nature Ecology & Evolution, 3(5), 787–800. https://doi.org/10.1038/s41559-019-0851-0
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Jamil, M., Kountche, B. A., Haider, I., Wang, J. Y., Aldossary, F., Zarban, R. A., … Al-Babili, S. (2019). Methylation at the C-3′ in D-Ring of Strigolactone Analogs Reduces Biological Activity in Root Parasitic Plants and Rice. Frontiers in Plant Science, 10. https://doi.org/10.3389/fpls.2019.00353
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Regaudie-de-Gioux, A., Huete-Ortega, M., Sobrino, C., López-Sandoval, D. C., González, N., Fernández-Carrera, A., … Duarte, C. M. (2019). Multi-model remote sensing assessment of primary production in the subtropical gyres. Journal of Marine Systems, 196, 97–106. https://doi.org/10.1016/j.jmarsys.2019.03.007
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Vaqué, D., Lara, E., Arrieta, J. M., Holding, J., Sà, E. L., Hendriks, I. E., … Duarte, C. M. (2019). Warming and CO2 Enhance Arctic Heterotrophic Microbial Activity. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00494
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Carstensen, J., & Duarte, C. M. (2019). Drivers of pH Variability in Coastal Ecosystems. Environmental Science & Technology, 53(8), 4020–4029. https://doi.org/10.1021/acs.est.8b03655
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Sun, G., & Zhang, X. (2019). A Novel Framework for Node/Edge Attributed Graph Embedding. Lecture Notes in Computer Science, 169–182. https://doi.org/10.1007/978-3-030-16142-2_14
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Hays, G. C., Bailey, H., Bograd, S. J., Bowen, W. D., Campagna, C., Carmichael, R. H., … Sequeira, A. M. M. (2019). Translating Marine Animal Tracking Data into Conservation Policy and Management. Trends in Ecology & Evolution, 34(5), 459–473. https://doi.org/10.1016/j.tree.2019.01.009