2023

Wang, Y., Liu, X., Ge, R., Moretti, M., Yin, J., Zhao, Z., Valle-Pérez, A. U., Liu, H., Tian, Z., Guo, T., Zhu, Y., Hauser, C. A. E., & Alshareef, H. N. (2023). Peptide Gel Electrolytes for Stabilized Zn Metal Anodes. ACS Nano. https://doi.org/10.1021/acsnano.3c04414
Wang, J., Chistov, G., Zhang, J., Huntington, B., Salem, I., Sandholu, A., & Arold, S. T. (2023). P-NADs:PUX-basedNAnobody Degraders for Ubiquitin-Independent Degradation of Target Proteins. https://doi.org/10.1101/2023.12.20.572486
van der Zwan, F. M., Augustin, N., Petersen, S., Altalhi, S. M., Schultz, J., Peixoto, R. S., Follmann, J., Anker, A., Benzoni, F., Garcia Paredes, E. R., Al Malallah, M., Shepard, L., Ouhssain, M., Jägerup, S. B., Jones, B. H., & Rosado, A. S. (2023). Widespread diffuse venting and large microbial iron-mounds in the Red Sea. Communications Earth & Environment, 4(1). https://doi.org/10.1038/s43247-023-01169-7
Staab, S., Cardénas, A., Peixoto, R. S., Schreiber, F., & Voolstra, C. R. (2023). Coracle—A Machine Learning Framework to Identify Bacteria Associated with Continuous Variables. Bioinformatics. https://doi.org/10.1093/bioinformatics/btad749
Sait, R., Al-Jawhari, H., Ganash, A., Wustoni, S., Chen, L., Hedhili, M. N., Wehbe, N., Hussein, D., Alhowity, A., Baeesa, S., Bangash, M., Abuzenadah, A., Inal, S., & Cross, R. (2023). Electrochemical Performance of Biocompatible TiC Films Deposited through Nonreactive RF Magnetron Sputtering for Neural Interfacing. ACS Biomaterials Science & Engineering. https://doi.org/10.1021/acsbiomaterials.3c01371
Fu, C., Frappi, S., Havlik, M. N., Howe, W., Harris, S. D., Laiolo, E., Gallagher, A. J., Masqué, P., & Duarte, C. M. (2023). Substantial blue carbon sequestration in the world’s largest seagrass meadow. Communications Earth & Environment, 4(1). https://doi.org/10.1038/s43247-023-01154-0
Alkuraythi, D. M., Alkhulaifi, M. M., Binjomah, A. Z., Alarwi, M., Aldakhil, H. M., Mujallad, M. I., Alharbi, S. A., Alshomrani, M., Alshahrani, S. M., Gojobori, T., & Alajel, S. M. (2023). Clonal Flux and Spread of Staphylococcus aureus Isolated from Meat and Its Genetic Relatedness to Staphylococcus aureus Isolated from Patients in Saudi Arabia. Microorganisms, 11(12), 2926. https://doi.org/10.3390/microorganisms11122926
Su, J., Xu, J., & Wang, D. (2024). PAC learning halfspaces in non-interactive local differential privacy model with public unlabeled data. Journal of Computer and System Sciences, 141, 103496. https://doi.org/10.1016/j.jcss.2023.103496
Moretti, M., Hountondji, M., Ge, R., Emwas, A.-H., Bilalis, P., Susapto, H. H., Alrashoudi, A., Liu, X., Briola, G. R., & Hauser, C. A. E. (2023). Selectively Positioned Catechol Moiety Supports Ultrashort Self-Assembling Peptide Hydrogel Adhesion for Coral Restoration. Langmuir, 39(49), 17903–17920. https://doi.org/10.1021/acs.langmuir.3c02553
Albaradei, S., Alganmi, N., Albaradie, A., Alharbi, E., Motwalli, O., Thafar, M. A., Gojobori, T., Essack, M., & Gao, X. (2023). A deep learning model predicts the presence of diverse cancer types using circulating tumor cells. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-47805-2
Zhong, Y., Nayak, P. D., Wustoni, S., Surgailis, J., Parrado Agudelo, J. Z., Marks, A., McCulloch, I., & Inal, S. (2023). Ionic Liquid Gated Organic Electrochemical Transistors with Broadened Bandwidth. ACS Applied Materials & Interfaces. https://doi.org/10.1021/acsami.3c11214
Bhattacharya, R., Chen, N., Shim, I., Kuwahara, H., Gao, X., Alkuraya, F. S., & Fahed, A. C. (2023). Massive underrepresentation of Arabs in genomic studies of common disease. Genome Medicine, 15(1). https://doi.org/10.1186/s13073-023-01254-8
Ramos-Mandujano, G., Grünberg, R., Zhang, Y., Bi, C., Guzmán-Vega, F. J., Shuaib, M., Gorchakov, R. V., Xu, J., Tehseen, M., Takahashi, M., Takahashi, E., Dada, A., Ahmad, A. N., Hamdan, S. M., Pain, A., Arold, S. T., & Li, M. (2023). An open-source, automated, and cost-effective platform for COVID-19 diagnosis and rapid portable genomic surveillance using nanopore sequencing. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-47190-w
Gou, X., Hu, L., Wang, D., & Zhang, X. (2023). A Fundamental Model with Stable Interpretability for Traffic Forecasting. Proceedings of the 1st ACM SIGSPATIAL International Workshop on Geo-Privacy and Data Utility for Smart Societies. https://doi.org/10.1145/3615889.3628510
Kafkas, Ş., Abdelhakim, M., Althagafi, A., Toonsi, S., Alghamdi, M., Schofield, P. N., & Hoehndorf, R. (2023). The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients. https://doi.org/10.1101/2023.11.16.23298615
Modolon, F., Schultz, J., Duarte, G., Vilela, C. L., Thomas, T., & Peixoto, R. S. (2023). In situ devices can culture the microbial dark matter of corals. IScience, 108374. https://doi.org/10.1016/j.isci.2023.108374
Althagafi, A., Zhapa-Camacho, F., & Hoehndorf, R. (2023). Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning. https://doi.org/10.1101/2023.11.08.566179
Goto, K., Masuzawa, Y., Kohmura, M., Takumi, A., Takeyama, H., Miyazaki, S., Gojobori, T., & Mineta, K. (2023). Glutamate-Sensing Genes Are Conserved among Populations Compared to Glutamate Metabolism Genes. Annals of Nutrition and Metabolism, 1–9. Portico. https://doi.org/10.1159/000535181
Junger, P. C., Sarmento, H., Giner, C. R., Mestre, M., Sebastián, M., Morán, X. A. G., Arístegui, J., Agustí, S., Duarte, C. M., Acinas, S. G., Massana, R., Gasol, J. M., & Logares, R. (2023). Global biogeography of the smallest plankton across ocean depths. Science Advances, 9(45). https://doi.org/10.1126/sciadv.adg9763
Alhattab, D. M., Isaioglou, I., Alshehri, S., Khan, Z. N., Susapto, H. H., Li, Y., Marghani, Y., Alghuneim, A. A., Díaz-Rúa, R., Abdelrahman, S., AL-Bihani, S., Ahmed, F., Felimban, R. I., Alkhatabi, H., Alserihi, R., Abedalthagafi, M., AlFadel, A., Awidi, A., Chaudhary, A. G., … Hauser, C. A. E. (2023). Fabrication of a three-dimensional bone marrow niche-like acute myeloid Leukemia disease model by an automated and controlled process using a robotic multicellular bioprinting system. Biomaterials Research, 27(1). https://doi.org/10.1186/s40824-023-00457-9
Savva, A., Hama, A., Herrera‐López, G., Schmidt, T., Migliaccio, L., Steiner, N., Kawan, M., Fiumelli, H., Magistretti, P. J., McCulloch, I., Baran, D., Gasparini, N., Schindl, R., Głowacki, E. D., & Inal, S. (2023). Photo‐Chemical Stimulation of Neurons with Organic Semiconductors (Adv. Sci. 31/2023). Advanced Science, 10(31). Portico. https://doi.org/10.1002/advs.202370217
Wang, X., Xu, T., Yao, Y., Cheung, P. P.-H., Gao, X., & Zhang, L. (2023). SARS-CoV-2 RNA-Dependent RNA Polymerase Follows Asynchronous Translocation Pathway for Viral Transcription and Replication. The Journal of Physical Chemistry Letters, 10119–10128. https://doi.org/10.1021/acs.jpclett.3c01249
Chen, J., Ng, M. K., & Wang, D. (2023). Quantizing Heavy-tailed Data in Statistical Estimation: (Near) Minimax Rates, Covariate Quantization, and Uniform Recovery. IEEE Transactions on Information Theory, 1–1. https://doi.org/10.1109/tit.2023.3329240
Delgadillo-Ordoñez, N., Garcias-Bonet, N., Raimundo, I., García, F., Villela, H., Osman, E., Santoro, E., Curdia, J., Rosado, J., Cardoso, P., Alsaggaf, A., Barno, A., Antony, C., Bocanegra, C., Berumen, M., Voolstra, C., Benzoni, F., Carvalho, S., & Peixoto, R. (2023). Probiotics reshape the coral microbiome in situ without affecting the surrounding environment. https://doi.org/10.21203/rs.3.rs-3414265/v1
Tang, Z., Pei, S., Peng, X., Zhuang, F., Zhang, X., & Hoehndorf, R. (2023). Neural Multi-hop Logical Query Answering with Concept-Level Answers. Lecture Notes in Computer Science, 522–540. https://doi.org/10.1007/978-3-031-47240-4_28
Pei, S., Zhang, X., Eguíluz, V. M., Kienle, S. S., Robinson, P. W., Costa, D. P., & Duarte, C. M. (2023). Coherent movement patterns of female northern elephant seals across the NE Pacific Ocean. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.689953
El-Khaled, Y. C., Duarte, C. M., & Peixoto, R. S. (2023). Evidence of hawksbill turtle (Eretmochelys imbricata) depredation on fish caught in gillnets. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1180219
El-Khaled, Y. C., Duarte, C. M., & Peixoto, R. S. (2023). Evidence of hawksbill turtle (Eretmochelys imbricata) depredation on fish caught in gillnets. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1180219
Li, Z., Jin, J., He, W., Long, W., Yu, H., Gao, X., Nakai, K., Zou, Q., & Wei, L. (2023). CoraL: interpretable contrastive meta-learning for the prediction of cancer-associated ncRNA-encoded small peptides. Briefings in Bioinformatics, 24(6). https://doi.org/10.1093/bib/bbad352
Alsemari, A., Guzmán-Vega, F. J., Meyer, B. F., & Arold, S. T. (2024). Novel Homozygous Variants of SLC13A5 Expand the Functional Heterogeneity of a Homogeneous Syndrome of Early Infantile Epileptic Encephalopathy. Pediatric Neurology, 151, 68–72. https://doi.org/10.1016/j.pediatrneurol.2023.10.005
Shim, I., Kuwahara, H., Chen, N., Hashem, M. O., AlAbdi, L., Abouelhoda, M., Won, H.-H., Natarajan, P., Ellinor, P. T., Khera, A. V., Gao, X., Alkuraya, F. S., & Fahed, A. C. (2023). Clinical utility of polygenic scores for cardiometabolic disease in Arabs. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41985-1
Wang, D., & Xu, J. (2024). Gradient complexity and non-stationary views of differentially private empirical risk minimization. Theoretical Computer Science, 982, 114259. https://doi.org/10.1016/j.tcs.2023.114259
Martynova, A., Genchi, L., Laptenok, S. P., Cusack, M., Stenchikov, G. L., Liberale, C., & Duarte, C. M. (2024). Atmospheric microfibrous deposition over the Eastern Red Sea coast. Science of The Total Environment, 907, 167902. https://doi.org/10.1016/j.scitotenv.2023.167902
Martynova, A., Genchi, L., Laptenok, S. P., Cusack, M., Stenchikov, G. L., Liberale, C., & Duarte, C. M. (2024). Atmospheric microfibrous deposition over the Eastern Red Sea coast. Science of The Total Environment, 907, 167902. https://doi.org/10.1016/j.scitotenv.2023.167902
Boshah, H., Samkari, F., Valle-Pérez, A. U., Alsawaf, S. M., Aldoukhi, A. H., Bilalis, P., Alshehri, S. A., Susapto, H. H., & Hauser, C. A. E. (2023). Evaluation of Potential Peptide-Based Inhibitors against SARS-CoV-2 and Variants of Concern. BioMed Research International, 2023, 1–17. https://doi.org/10.1155/2023/3892370
Zhou, J., Li, H., Liao, X., Zhang, B., He, W., Li, Z., Zhou, L., & Gao, X. (2023). A unified method to revoke the private data of patients in intelligent healthcare with audit to forget. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41703-x
Han, R., Qi, J., Xue, Y., Sun, X., Zhang, F., Gao, X., & Li, G. (2023). HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-03053-1
Ostonov, A., & Moshkov, M. (2023). On Complexity of Deterministic and Nondeterministic Decision Trees for Conventional Decision Tables from Closed Classes. Entropy, 25(10), 1411. https://doi.org/10.3390/e25101411
Chu, Y., Zhou, L., Luo, G., Qiu, Z., & Gao, X. (2023). Topology-Preserving Computed Tomography Super-Resolution Based on Dual-Stream Diffusion Model. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023, 260–270. https://doi.org/10.1007/978-3-031-43999-5_25
Knodel, M. M., Nägel, A., Herrmann, E., & Wittum, G. (2023). PDE Models of Virus Replication Coupling 2D Manifold and 3D Volume Effects Evaluated at Realistic Reconstructed Cell Geometries. Finite Volumes for Complex Applications X—Volume 1, Elliptic and Parabolic Problems, 315–323. https://doi.org/10.1007/978-3-031-40864-9_26
Samardzic, V. S., Macvanin, M. T., Zafirovic, S. S., Obradovic, M. M., Gluvic, Z. M., Grubin, J., Gao, X., Essack, M., & Isenovic, E. R. (2023). Nitric oxide, thyroglobulin, and calcitonin: unraveling the nature of thyroid nodules. Frontiers in Endocrinology, 14. https://doi.org/10.3389/fendo.2023.1241223
Bilalis, P., Alrashoudi, A. Α., Susapto, H. H., Moretti, M., Alshehri, S., Abdelrahman, S., Elsakran, A., & Hauser, C. A. E. (2023). Dipeptide-Based Photoreactive Instant Glue for Environmental and Biomedical Applications. ACS Applied Materials & Interfaces, 15(40), 46710–46720. https://doi.org/10.1021/acsami.3c10726
Kulmanov, M., Guzmán-Vega, F. J., Roggli, P. D., Lane, L., Arold, S. T., & Hoehndorf, R. (2023). DeepGO-SE: Protein function prediction as Approximate Semantic Entailment. https://doi.org/10.1101/2023.09.26.559473
Malawsky, D. S., van Walree, E., Jacobs, B. M., Heng, T. H., Huang, Q. Q., Sabir, A. H., Rahman, S., Sharif, S. M., Khan, A., Mirkov, M. U., Kuwahara, H., Gao, X., Alkuraya, F. S., Posthuma, D., Newman, W. G., Griffiths, C. J., Mathur, R., van Heel, D. A., Finer, S., … Martin, H. C. (2023). Influence of autozygosity on common disease risk across the phenotypic spectrum. Cell, 186(21), 4514-4527.e14. https://doi.org/10.1016/j.cell.2023.08.028
Garcias-Bonet, N., Roik, A., Tierney, B., García, F. C., Villela, H. D. M., Dungan, A. M., Quigley, K. M., Sweet, M., Berg, G., Gram, L., Bourne, D. G., Ushijima, B., Sogin, M., Hoj, L., Duarte, G., Hirt, H., Smalla, K., Rosado, A. S., Carvalho, S., … Peixoto, R. S. (2023). Horizon scanning the application of probiotics for wildlife. Trends in Microbiology. https://doi.org/10.1016/j.tim.2023.08.012
Alsolme, E., Alqahtani, S., Fageeh, M., Barakeh, D., Sharma, N. K., Mangul, S., Robinson, H. A., Fathaddin, A., Hauser, C. A. E., & Abedalthagafi, M. (2023). The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel. Diagnostics, 13(18), 2993. https://doi.org/10.3390/diagnostics13182993
Liao, X., Zhu, W., Zhou, J., Li, H., Xu, X., Zhang, B., & Gao, X. (2023). Repetitive DNA sequence detection and its role in the human genome. Communications Biology, 6(1). https://doi.org/10.1038/s42003-023-05322-y
Guo, Y., Marin, J. M., Ashry, I., Trichili, A., Havlik, M.-N., Ng, T. K., Duarte, C. M., & Ooi, B. S. (2023). Submarine optical fiber communication provides an unrealized deep-sea observation network. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-42748-0
Druet, V., Ohayon, D., Petoukhoff, C. E., Zhong, Y., Alshehri, N., Koklu, A., Nayak, P. D., Salvigni, L., Almulla, L., Surgailis, J., Griggs, S., McCulloch, I., Laquai, F., & Inal, S. (2023). A single n-type semiconducting polymer-based photo-electrochemical transistor. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41313-7
Savva, A., Hama, A., Herrera‐López, G., Schmidt, T., Migliaccio, L., Steiner, N., Kawan, M., Fiumelli, H., Magistretti, P. J., McCulloch, I., Baran, D., Gasparini, N., Schindl, R., Głowacki, E. D., & Inal, S. (2023). Photo‐Chemical Stimulation of Neurons with Organic Semiconductors. Advanced Science, 10(31). Portico. https://doi.org/10.1002/advs.202300473
Sanz-Sáez, I., Sánchez, P., Salazar, G., Sunagawa, S., de Vargas, C., Bowler, C., Sullivan, M. B., Wincker, P., Karsenti, E., Pedrós-Alió, C., Agustí, S., Gojobori, T., Duarte, C. M., Gasol, J. M., Sánchez, O., & Acinas, S. G. (2023). Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation. ISME Communications, 3(1). https://doi.org/10.1038/s43705-023-00290-0
Fan, M., Huang, G., Lou, J., Gao, X., Zeng, T., & Li, L. (2023). Cross-Parametric Generative Adversarial Network-Based Magnetic Resonance Image Feature Synthesis for Breast Lesion Classification. IEEE Journal of Biomedical and Health Informatics, 27(11), 5495–5505. https://doi.org/10.1109/jbhi.2023.3311021
Li, X., Yang, Q., Luo, G., Xu, L., Dong, W., Wang, W., Dong, S., Wang, K., Xuan, P., & Gao, X. (2023). SAGDTI: self-attention and graph neural network with multiple information representations for the prediction of drug-target interactions. Bioinformatics Advances. https://doi.org/10.1093/bioadv/vbad116
Ma, J., Li, C., Zhang, Y., Wang, Z., Li, S., Guo, Y., Zhang, L., Liu, H., Gao, X., & Song, J. (2023). MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning. Bioinformatics, 39(9). https://doi.org/10.1093/bioinformatics/btad524
Huang, R., He, J., Wang, N., Christakos, G., Gu, J., Song, L., Luo, J., Agusti, S., Duarte, C. M., & Wu, J. (2023). Carbon sequestration potential of transplanted mangroves and exotic saltmarsh plants in the sediments of subtropical wetlands. Science of The Total Environment, 904, 166185. https://doi.org/10.1016/j.scitotenv.2023.166185
Busbait, M., Moshkov, M., Moshkova, A., & Shevtchenko, V. (2023). Diagnosis of Extensions of Constant Faults in Circuits. Studies in Systems, Decision and Control, 53–70. https://doi.org/10.1007/978-3-031-39031-9_4
Alghamdi, S. M., & Hoehndorf, R. (2023). Improving the classification of cardinality phenotypes using collections. Journal of Biomedical Semantics, 14(1). https://doi.org/10.1186/s13326-023-00290-y
Carvalho, S., Shchepanik, H., Aylagas, E., Berumen, M. L., Costa, F. O., Costello, M. J., Duarte, S., Ferrario, J., Floerl, O., Heinle, M., Katsanevakis, S., Marchini, A., Olenin, S., Pearman, J. K., Peixoto, R. S., Rabaoui, L. J., Ruiz, G., Srėbalienė, G., Therriault, T. W., … Zaiko, A. (2023). Hurdles and opportunities in implementing marine biosecurity systems in data-poor regions. BioScience, 73(7), 494–512. https://doi.org/10.1093/biosci/biad056
Stenton, S. L., O’Leary, M., Lemire, G., VanNoy, G. E., DiTroia, S., Ganesh, V. S., Groopman, E., O’Heir, E., Mangilog, B., Osei-Owusu, I., Pais, L. S., Serrano, J., Singer-Berk, M., Weisburd, B., Wilson, M., Austin-Tse, C., Abdelhakim, M., Althagafi, A., Babbi, G., … O’Donnell-Luria, A. (2023). Critical assessment of variant prioritization methods for rare disease diagnosis within the Rare Genomes Project. https://doi.org/10.1101/2023.08.02.23293212
Guzmán‐Vega, F. J., González‐Álvarez, A. C., Peña‐Guerra, K. A., Cardona‐Londoño, K. J., & Arold, S. T. (2023). Leveraging AI Advances and Online Tools for Structure‐Based Variant Analysis. Current Protocols, 3(8). Portico. https://doi.org/10.1002/cpz1.857
Abrogueña, J. B. R., Tanita, I., Anton, A., Maquirang, J. R. H., Duarte, C., Woo, S. P., Berković, B., Roje-Busatto, R., Yacoubi, L., Doyle, A., Konji, H., Al-Johani, T., Chen, J.-L., & Rabaoui, L. J. (2023). Influence of environmental variables on the abundance of Synapta maculata (Holothuroidea: Synaptidae) in a multi-species seagrass meadow in the southern Red Sea of Saudi Arabia. Regional Studies in Marine Science, 66, 103133. https://doi.org/10.1016/j.rsma.2023.103133
Aspromonte, M. C., Conte, A. D., Zhu, S., Tan, W., Shen, Y., Zhang, Y., Li, Q., Wang, M. H., Babbi, G., Bovo, S., Martelli, P. L., Casadio, R., Althagafi, A., Toonsi, S., Kulmanov, M., Hoehndorf, R., Katsonis, P., Williams, A., Lichtarge, O., … Leonardi, E. (2023). CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs). https://doi.org/10.21203/rs.3.rs-3209168/v1
Villela, H., Modolon, F., Schultz, J., Delgadillo-Ordoñez, N., Carvalho, S., Soriano, A. U., & Peixoto, R. S. (2023). Genome analysis of a coral-associated bacterial consortium highlights complementary hydrocarbon degradation ability and other beneficial mechanisms for the host. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-38512-z
Alkuraythi, D. M., Alkhulaifi, M. M., Binjomah, A. Z., Alarawi, M., Aldakhil, H. M., Mujallad, M. I., Alharbi, S. A., Alshomrani, M., Alshahrani, S. M., Gojobori, T., & Alajel, S. M. (2023). Genetic characterization and dissemination ofStaphylococcus aureusand Staphylococci genus: food and health perspective. https://doi.org/10.1101/2023.07.24.550257
Abdelrahman, S., Ge, R., Susapto, H. H., Liu, Y., Samkari, F., Moretti, M., Liu, X., Hoehndorf, R., Emwas, A.-H., Jaremko, M., Rawas, R. H., & Hauser, C. A. E. (2023). The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds. ACS Nano, 17(15), 14508–14531. https://doi.org/10.1021/acsnano.3c01176
Macvanin, M. T., Gluvic, Z. M., Zaric, B. L., Essack, M., Gao, X., & Isenovic, E. R. (2023). New biomarkers: prospect for diagnosis and monitoring of thyroid disease. Frontiers in Endocrinology, 14. https://doi.org/10.3389/fendo.2023.1218320
Kafkas, Șenay, Abdelhakim, M., Uludag, M., Althagafi, A., Alghamdi, M., & Hoehndorf, R. (2023). Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes. BMC Bioinformatics, 24(1). https://doi.org/10.1186/s12859-023-05406-w
Liu, C., Zhang, Y., Gao, X., & Wang, G. (2023). Identification of cell subpopulations associated with disease phenotypes from scRNA-seq data using PACSI. BMC Biology, 21(1). https://doi.org/10.1186/s12915-023-01658-3
Petrović, N., Essack, M., Šami, A., Perry, G., Gojobori, T., Isenović, E. R., & Bajić, V. P. (2023). MicroRNA networks linked with BRCA1/2, PTEN, and common genes for Alzheimer’s disease and breast cancer share highly enriched pathways that may unravel targets for the AD/BC comorbidity treatment. Computational Biology and Chemistry, 106, 107925. https://doi.org/10.1016/j.compbiolchem.2023.107925
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Guo, X.-G., Hong, P.-Y., & Laleg-Kirati, T.-M. (2021). Calibration and validation for a real-time membrane bioreactor: A sliding window approach. Journal of Process Control, 98, 92–105. https://doi.org/10.1016/j.jprocont.2020.11.013
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2020

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Alam, I., Kamau, A., Gugi, D., Gojobori, T., Duarte, C., & Bajic, V. (2020). KAUST Metagenomic Analysis Platform (KMAP), Enabling Access to Massive Analytics of Re-Annotated Metagenomic Data. Journal is Scientific Reports, https://doi.org/10.1038/s41598-021-90799-y
Garcias‐Bonet, N., Eguíluz, V. M., Díaz‐Rúa, R., & Duarte, C. M. (2020). Host‐association as major driver of microbiome structure and composition in Red Sea seagrass ecosystems. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15334
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