machine learning | CBRC | Computational Bioscience Research Center

Ricardo Henao

Associate Professor, Bioengineering

Professors

Di Wang

Assistant Professor, Computer Science

Professors

Mikhail Moshkov

Professor, Applied Mathematics and Computational Sciences

Professors

Xin Gao

Program Chair, Computer Science

Professors

Bin Zhang

Postdoctoral Fellow, Computational Bioscience Research Center

Postdoctoral Fellows

Olga Mashkova

PhD Student, Computer Science

Students

CEMSE BESE CBRC STRUBE Kelly Cardona Londoño P.hD

Kelly J. Cardona Londoño

PhD Student, Structural Biology and Engineering

Students

Yang Liu

PhD Student, Computer Science

Students

Xiaochuan Gou

PhD Student, Computer Science

Students

Zhenwen Liang

PhD Student, Computer Science

Students

Sakhaa Alsaedi

PhD Student, Computer Science

Students

Qiannan Zhang

PhD Student, Computer Science

Students

Somayah Albaradei

PhD Student, Computer Science

Students

Fahad Aljehani

PhD Student, Estimation Modeling and Analysis Group

Students

Zhuo Yang

PhD Student, Computer Science

Students

Peihao Li

PhD Student, Electrical and Computer Engineering

Students

Gian Marco Messa

PhD Student, Computer Science

Students

Shichao Pei

PhD Student, Computer Science

Students

Shahad Qathan

MS Student, Computer Science

Alumni

Xi Peng

PhD Student, Computer Science

Alumni

Vasiliki Kordopati

Master Degree, Computer Science

Alumni

Majed Alzahrani

PhD Degree, Computer Science

Alumni

Imane Boudellioua

PhD Degree, Computer Science

Alumni

Hind Abdulaziz Alamro

PhD Student, Computer Science

Alumni

Sara Althubaiti

PhD Student, Computer Science

Alumni

Maha Thafar

PhD Student, Computer Science

Alumni

Siqing Hou

MS Degree, Computer Science

Alumni

Trisevgeni Rapakoulia

PhD Degree, Computer Science

Alumni

Maxat Kulmanov

Research Scientist, Bio-Ontology Research Group

Research Staff

Yu Li

PhD Student, Computer Science

Alumni

Mona Alshahrani

PhD Degree, Computer Science

Alumni

Ramzan Umarov

PhD Student, Computer Science

Alumni

Azza Althagafi

PhD Student, Computer Science

Alumni

Enhong Chen

Visiting Scholar, Computational Bioscience Research Center

Visiting Scholars

Ashraf M. Kibriya

Postdoctoral Research Fellow, Computer, Electrical and Mathematical Sciences and Engineering

Former Members

Abdullah Muhammad Kamal

Visiting Student, Computer Science

Former Members

Jay Morgan

Visiting Student, Computer Science

machine learning

Former Members

Tilman Hinnerichs

Visiting Student, Bio-Ontology Research Group

Former Members

Olaa A. Motwalli

PhD Degree, Computer Science

Former Members

Boris Jankovic

Senior Computational Scientist, Knowledge Mining Lab

Former Members

Lizhong Ding

Postdoctoral Research Fellow, Structural and Functional Bioinformatics Group

Former Members

Abderrazak Chahid

PhD Student, Electrical and Computer Engineering

Former Members

Peng Yang

Postdoctoral Research Fellow, Structural and Functional Bioinformatics Group

Former Members

Renmin Han

Postdoctoral Research Fellow, Structural and Functional Bioinformatics Group

Former Members

Sheng Wang

Research Scientist, Structural and Functional Bioinformatics Group

Former Members

Slimane Laref, Ph.D.

Research Scientists, Computer Science

Computational Specialists

Characterization of Natural Bacterial Pathogens with Genomic and Predictive Modelling

Dr. Danesh Moradigaravand, Infectious Disease Epidemiology lab, BESE, KAUST

Monday, December 05, 12:00

- 13:00

Building 3, Level 5, Room 5209

Seminar

KAUST-CEMSE-CBRC-PhD-Dissertation-Defense-Maha-A-Thafar (1)

Drug Repositioning through the Development of Diverse Computational Methods using Machine Learning, Deep Learning, and Graph Mining

Maha Thafar

Thursday, June 30, 08:30

- 10:30

KAUST

PhD Dissertation Defense

CBRC Dual Seminar - Analysis of COVID-19 Severity - DeepSVP computational method

Sakhaa Al-Saedi, PhD Student; Azza Althagafi, PhD Student

Tuesday, April 12, 13:00

- 14:00

KAUST

Seminar

To Encourage or to Restrict: the Label Dependency in Multi-Label Learning

Zhuo Yang

Wednesday, March 30, 17:30

- 19:30

KAUST

PhD Dissertation Defense

Omics-based Metastasis Prediction using Machine Learning and Deep Learning

Somayah Albaradei

Wednesday, March 30, 14:00

- 15:00

KAUST

PhD Dissertation Defense

KAUST Conference on Artificial Intelligence

Artificial Intelligence Initiative at KAUST

Wednesday, April 28, 08:30

- 16:30

KAUST

Research Conference

Novel computational methods for promoter identification and analysis

Ramzan Umarov

Sunday, February 16, 16:00

- 18:00

Building 2, Level 5, Room 5209

PhD Dissertation Defense

Machine Learning Models for Context Aware Recommendation Systems

Monday, November 04, 10:00

- 11:00

Building 3, Level 5 , Room 5209

PhD Dissertation Defense

Zero in on computational challenges in Nanopore sequencing

Xin Gao

Monday, September 02, 12:00

- 13:00

Building 9, Level 2, Hall 1

Graduate Seminar

KAUST CEMSE CS PhD Defense Imene Boudellioua

Semantic Prioritization of Novel Causative Genomic Variants in Mendelian and Oligogenic Diseases

Imane Boudellioua

Tuesday, February 05, 14:00

- 17:00

Building 9, Room 4223

PhD Dissertation Defense

AI4GH Seminar Series - Vector Representation of Biological Entities Based on Ontologies and Their Annotations

Sunday, November 18, 12:00

- 13:00

B2, Room 5220

Seminar

AI4GH Seminar Series - Towards Rational Design of Biosynthesis Pathways

Meshari Alazmi

Sunday, November 11, 12:00

- 13:00

Building 2 Room 5220

Seminar

AI4GH Seminar Series - Genome-scale Regression Analysis Reveals a Linear Relationship for Promoters and Enhancers After Combinatorial Drug Treatment

Trisevgeni Rapakoulia

Wednesday, November 07, 12:00

- 13:00

Building 2 Room 5220

Seminar

KAUST CEMSE CBRC Elaf Jameel Islam Master Defense

Prediction of active and inactive chemical compounds from high-throughput assays

Tuesday, November 06, 10:15

- 11:45

B5, L5 Room 5209

machine learning

Master Thesis Defense

Variant Prioritization in Cancer: Understanding and Prediction of Cancer Driver Genes and Mutations

Sara Althubaiti

Monday, November 05, 10:30

- 12:30

Building 3, Room 5209

Master Thesis Defense

Contributions to Computational Methods for Association Extraction from Biomedical Data: Applications to Text Mining and In Silico Toxicology

Thursday, November 01, 11:00

- 13:00

Building 2, Level 5, room 5220

PhD Dissertation Defense

VSIM: Visualization and Simulation of Genomes for Premarital Testing

Azza Althagafi

Thursday, November 01, 08:00

- 10:00

Building 3, Level 5, Room 5209

Master Thesis Defense

KAUST CEMSE CS BORG Visualization and Simulation of Genomes

AI4GH Seminar Series - VSIM: Visualization and Simulation of Genomes for Premarital Testing

Azza Althagafi

Wednesday, October 31, 12:00

- 13:00

Building 2 Room 5220

Seminar

Towards rational design of biosynthesis pathways

Meshari Alazmi

Wednesday, October 24, 17:00

- 18:30

Building3, Room 5209

PhD Dissertation Defense

KAUST CEMSE CS BORG Machine Learning with Biological Knowledge Graphs

AI4GH Seminar Series - Machine Learning with Biological Knowledge Graphs

Mona Alshahrani

Wednesday, October 24, 12:00

- 13:00

Building 2, Room 5220

Seminar

AI4GH Seminar Series - Variant Prioritization in Cancer: Understanding and Prediction of Cancer Driver Genes and Mutations

Wednesday, October 17, 12:00

- 13:00

Building 2, Room 5220

Seminar

Bio2Vec Kickoff Meeting

Wednesday, April 25, 08:00

- 17:00

Bio2Vec kickoff meeting Paris, France.

Seminar

Neural Inductive Matrix Factorization for Predicting Disease-Gene Associations

Siqing Hou

Wednesday, April 18, 10:00

- 11:30

Building 3, Room 5208

Master Thesis Defense

KAUST CEMSE CBRC CS PhD Defense Rawan Olayan

Novel Computational Methods to Predict Drug–target Interactions Using Graph Mining and Machine Learning Approaches

Monday, December 11, 10:00

- 12:00

Building 3, Level 5, Room 5220

PhD Dissertation Defense

KAUST CEMSE CS Sensors PhD Defense Manal Kalkatawi

Contributions to In Silico Genome Annotation

Thursday, November 09, 10:00

- 13:00

Building 3, Level 5, Room 5209

PhD Dissertation Defense

Mining Genome-Scale Growth Phenotype Data through Constant-Column Biclustering

Majed Alzahrani

Wednesday, May 17, 15:00

- 17:00

Building 3, Level 5, Room 5209

PhD Dissertation Defense

KAUST CEMSE CS PhD Defense Arturo Magana Mora

Genetic Algorithms for Optimization of Machine-learning Models and their Applications in Bioinformatics

Monday, April 10, 13:00

- 15:00

Building 3, Level 5, Room 5209

PhD Dissertation Defense

Novel Computational Methods that Facilitate Development of Cyanofactories for Free Fatty Acid Production by Olaa Motwalli

Olaa A. Motwalli

Sunday, April 09, 16:00

- 17:00

Building 3, Level 5, Room 5209

PhD Dissertation Defense

Novel Data Mining Methods for Virtual Screening of Biological Active Chemical Compounds by Othman Soufan

Othman Soufan

Wednesday, November 16, 14:00

- 15:00

Lecture Hall 2, Building 9

PhD Dissertation Defense

2022-10-16 - 10:45

BORG team win at the KAUST-NVIDIA GPU Hackathon 2022

1 year 11 months ago

2022-06-12 - 12:21

KAUST alumnus named in Forbes' “30 Under 30 Asia list” – Class of 2022

2 years 3 months ago

2022-05-29 - 11:00

AI helps diagnose post-COVID lung problems

2 years 4 months ago

2022-04-14 - 09:57

CBRC's Alumni Dr.Tanvir Alam wins top researcher award in Qatar

2 years 5 months ago

2022-03-31 - 13:56

MS Thesis Defense: Description Logic EL++Embeddings with Intersectional Closure by Xi Peng

2 years 6 months ago

2022-03-06 - 09:39

Congratulations to Lara Monagel on securing sixth place in IBDAA and representing KSA at the ISEF 2022

2 years 6 months ago

machine learning

2022-03-31 - 13:41

MS Thesis Defense: Rare variant collapsing analysis on UK Biobank by Yang Liu

2 years 6 months ago

2021-07-12 - 14:15

Training an AI eye on the Moon

3 years 2 months ago

2021-07-26 - 10:17

Aryam Alotaibi SRSI Student CEMSE CBRC SFB

CBRC congratulates Aryam Alotaibi a SRSI student on winning the top paper Award

3 years 2 months ago

2021-01-07 - 16:08

Xin Gao promoted to rank of professor

3 years 8 months ago

2020-11-10 - 10:35

Talented KAUST Ph.D. student aims to revolutionize healthcare with machine learning

3 years 10 months ago

2020-08-24 - 10:25

KAUST STAT CS CBRC SFB BIOE Converging Machine Learning With Generating Thermodynamic Data

Computers excel in chemistry class

4 years 1 month ago

2020-06-02 - 11:47

KAUST CEMSE CS MINE STAT CNR AI CBRC Xiangliang Zhang

Tracking the Curve: Analyzing the Emotional Response to COVID-19

4 years 4 months ago

2020-04-12 - 10:39

Flattening the sentimental curve

4 years 5 months ago

2020-03-10 - 15:37

KAUST-CEMSE-CS-CBRC-SFB-Approximating-Kernel-Of-Truth

Approximating a kernel of truth

4 years 6 months ago

2020-01-06 - 12:05

KAUST CEMSE CBRC SFB CS AI Methods To Predict The Interaction Of Short Linear Protein Segment

LD Motif Finder locates ancient hidden protein patterns

4 years 8 months ago

2019-09-11 - 12:00

Database to support infectious disease research

5 years ago

2019-02-17 - 13:53

Tweaking tools to track tweets over time

5 years 7 months ago

2018-12-09 - 15:12

Alumni Feature: Rawan Olayan

5 years 9 months ago

2018-11-06 - 14:10

KAUST CEMSE CBRC Sara Althubaiti Master Defense

Sara Althubaiti defends her Master's thesis

5 years 10 months ago

2018-10-24 - 16:05

CEMSE CS CBRC Meshari Alazmi PhD Defense

Meshari Alazmi defends his Ph.D. thesis

5 years 11 months ago

2018-10-16 - 16:29

CEMSE CS CBRC BORG Mona Alshahrani Thesis Proposal Defense

Mona Alshahrani defends her thesis proposal

5 years 11 months ago

2018-10-14 - 14:26

CEMSE CS Xin Gao With Structural Biologist Stefan Arold

Computing solutions for biological problems

5 years 11 months ago

2018-07-22 - 14:43

KAUST CEMSE CBRC KML Christophe Van Neste

A bioinformatician’s quest to fight cancer

6 years 2 months ago

2018-07-31 - 14:10

KAUST CEMSE CS CBRC Maxat Kulmanov Thesis Proposal Defense

Maxat Kulmanov defends his thesis proposal

6 years 2 months ago

2018-05-22 - 13:16

KAUST CEMSE CS CBRC BESE SFB Meshari Alazami Thesis Proposal

Meshari Alazami defends his thesis proposal

6 years 4 months ago

2018-04-23 - 08:49

KAUST CEMSE CS CBRC SFB Siqing Hou Masters Defense

Siqing Hou defends his Master’s thesis

6 years 5 months ago

2018-04-18 - 09:29

Alumni Feature: Abdullah Khamis

6 years 5 months ago

2018-03-04 - 14:38

KAUST CEMSE AMCS EE EMANG CBRC Profesor Meriem Laleg Joins CBRC

Professor Meriem Laleg Joins CBRC

6 years 7 months ago

2018-02-25 - 15:27

Alumni Feature: Arturo Magana Mora

6 years 7 months ago

2017-12-17 - 11:10

Class of 2017

6 years 9 months ago

2017-11-27 - 15:53

Using educational data to improve student and teacher performance

6 years 10 months ago

2017-10-24 - 14:36

Facebook AI new language explained by KAUST Professor Xiangliang Zhang

6 years 11 months ago

2017-05-04 - 12:00

CEMSE CBRC Haitham Ashoor Vladimir Bajic Olaa Motwalli Arturo Magana Mora

Student life: studying and working at the Computational Bioscience Research Center (KAUST)

7 years 5 months ago

2017-05-04 - 15:08

The Ph.D. journey

7 years 5 months ago

2017-04-05 - 08:49

KAUST CEMSE CBRC Zhihao Xia Visiting Student

Living and Working in KAUST as a VSRP or Visiting Student

7 years 6 months ago

2017-03-13 - 11:13

KAUST CEMSE CBRC BORG CGG SFB STAT CS Professors Takashi Gojobori Xin Gao And Robert Hoehndorf

Professors discuss big data and human health in latest Sci-Café

7 years 6 months ago

2017-02-08 - 15:08

KAUST CEMSE CBRC AMCS BESE B CS KML CBRC Director Vladimir Bajic Presenting The Research Done By Center

Swedish delegation visits KAUST

7 years 7 months ago

2016-12-08 - 12:00

CEMSE Big Data Open Day shows off fascinating discoveries

7 years 9 months ago

2016-08-02 - 15:37

Join the CBRC through the VSRP

8 years 2 months ago

2016-07-20 - 15:56

Follow us on social media

8 years 2 months ago

2016-07-01 - 16:09

Prof. Xin Gao Promoted to Associate Professor

8 years 3 months ago